Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HG582_RS00205 Genome accession   NZ_CP051534
Coordinates   37118..37861 (+) Length   247 a.a.
NCBI ID   WP_202143933.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-009     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32118..42861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG582_RS00180 (HG582_00180) panD 34267..34620 (+) 354 WP_000142252.1 aspartate 1-decarboxylase -
  HG582_RS00185 (HG582_00185) - 34623..34925 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  HG582_RS00190 (HG582_00190) - 34925..35929 (+) 1005 WP_202143932.1 PDZ domain-containing protein -
  HG582_RS00195 (HG582_00195) comB6 35937..36992 (+) 1056 WP_202144352.1 P-type conjugative transfer protein TrbL Machinery gene
  HG582_RS00200 (HG582_00200) comB7 37008..37121 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HG582_RS00205 (HG582_00205) comB8 37118..37861 (+) 744 WP_202143933.1 virB8 family protein Machinery gene
  HG582_RS00210 (HG582_00210) comB9 37861..38850 (+) 990 WP_202143934.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG582_RS00215 (HG582_00215) comB10 38843..39973 (+) 1131 WP_202143935.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG582_RS00220 (HG582_00220) - 40044..41462 (+) 1419 WP_202143936.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG582_RS00225 (HG582_00225) gmd 41472..42617 (+) 1146 WP_165515408.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28842.07 Da        Isoelectric Point: 8.9604

>NTDB_id=439554 HG582_RS00205 WP_202143933.1 37118..37861(+) (comB8) [Helicobacter pylori strain LIM-009]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYRLLGLMSFIAFVLAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIVAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=439554 HG582_RS00205 WP_202143933.1 37118..37861(+) (comB8) [Helicobacter pylori strain LIM-009]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTCTCGGTGAACGATTTGGACATGCAAAGCGTGTTTCGGCTAGAAAGGAACCGCTTGAAAATCGCTT
ACAGGCTTTTAGGTTTGATGAGCTTTATCGCGTTTGTCTTAGCGATCGTGTTAATCAGTATCCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAACTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
ATCCATTGTTGCTAAACTTTTGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGTTACAGCATCACTGAAATC
GCGCCGACTAATAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.356

100

0.964