Detailed information NTG0439552

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG582_RS00195
• Genome accession: NZ_CP051534
• Coordinates: 35937..36992 (+)
• Length: 351 a.a.
• NCBI ID: WP_202144352.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-009
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 30937..41992

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG582_RS00165 (HG582_00165)	-	31349..31762 (+)	414	WP_001023008.1	universal stress protein	-
HG582_RS00170 (HG582_00170)	-	31777..32052 (+)	276	WP_115018330.1	ATP-dependent Clp protease adaptor ClpS	-
HG582_RS00175 (HG582_00175)	-	32052..34277 (+)	2226	WP_202143931.1	ATP-dependent Clp protease ATP-binding subunit	-
HG582_RS00180 (HG582_00180)	panD	34267..34620 (+)	354	WP_000142252.1	aspartate 1-decarboxylase	-
HG582_RS00185 (HG582_00185)	-	34623..34925 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HG582_RS00190 (HG582_00190)	-	34925..35929 (+)	1005	WP_202143932.1	PDZ domain-containing protein	-
HG582_RS00195 (HG582_00195)	comB6	35937..36992 (+)	1056	WP_202144352.1	P-type conjugative transfer protein TrbL	Machinery gene
HG582_RS00200 (HG582_00200)	comB7	37008..37121 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HG582_RS00205 (HG582_00205)	comB8	37118..37861 (+)	744	WP_202143933.1	virB8 family protein	Machinery gene
HG582_RS00210 (HG582_00210)	comB9	37861..38850 (+)	990	WP_202143934.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG582_RS00215 (HG582_00215)	comB10	38843..39973 (+)	1131	WP_202143935.1	DNA type IV secretion system protein ComB10	Machinery gene
HG582_RS00220 (HG582_00220)	-	40044..41462 (+)	1419	WP_202143936.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39762.62 Da
• Isoelectric Point: 8.8155

>NTDB_id=439552 HG582_RS00195 WP_202144352.1 35937..36992(+) (comB6) [Helicobacter pylori strain LIM-009]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVITCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNAFNSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTIDTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439552 HG582_RS00195 WP_202144352.1 35937..36992(+) (comB6) [Helicobacter pylori strain LIM-009]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTATTTGTGGGGTTTTTTGCACTTTTCAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGTTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTAATCACATGCCTTAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTCTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCACTAACCTCAGCCAAAACGCTTTCAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAGATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.157	100	0.952