Detailed information NTG0439533

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG583_RS00215
• Genome accession: NZ_CP051533
• Coordinates: 39437..40573 (+)
• Length: 378 a.a.
• NCBI ID: WP_202142990.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-010
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 34437..45573

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG583_RS00180 (HG583_00180)	panD	34876..35226 (+)	351	WP_108593697.1	aspartate 1-decarboxylase	-
HG583_RS00185 (HG583_00185)	-	35238..35540 (+)	303	WP_000347928.1	YbaB/EbfC family nucleoid-associated protein	-
HG583_RS00190 (HG583_00190)	-	35540..36535 (+)	996	WP_202143421.1	PDZ domain-containing protein	-
HG583_RS00195 (HG583_00195)	comB6	36543..37598 (+)	1056	WP_202143420.1	P-type conjugative transfer protein TrbL	Machinery gene
HG583_RS00200 (HG583_00200)	comB7	37614..37727 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HG583_RS00205 (HG583_00205)	comB8	37724..38461 (+)	738	WP_202142988.1	virB8 family protein	Machinery gene
HG583_RS00210 (HG583_00210)	comB9	38461..39444 (+)	984	WP_202142989.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG583_RS00215 (HG583_00215)	comB10	39437..40573 (+)	1137	WP_202142990.1	DNA type IV secretion system protein ComB10	Machinery gene
HG583_RS00220 (HG583_00220)	-	40643..42055 (+)	1413	WP_202142991.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HG583_RS00225 (HG583_00225)	gmd	42111..43256 (+)	1146	WP_000659875.1	GDP-mannose 4,6-dehydratase	-
HG583_RS00230 (HG583_00230)	-	43249..44181 (+)	933	WP_079298292.1	GDP-L-fucose synthase	-
HG583_RS08300	-	44570..44812 (-)	243	WP_237389108.1	hypothetical protein	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42152.63 Da
• Isoelectric Point: 9.7401

>NTDB_id=439533 HG583_RS00215 WP_202142990.1 39437..40573(+) (comB10) [Helicobacter pylori strain LIM-010]
MNKWLKGAVVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDTATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=439533 HG583_RS00215 WP_202142990.1 39437..40573(+) (comB10) [Helicobacter pylori strain LIM-010]
GTGAATAAGTGGCTTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCTAAAGAAGAGACTTTTACTAGCCCTCCCATGGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACACCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCACAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCCATTGTGGT
GATTAGAGAGGGGAGTAGGGTATTCATTTCGCCCAATACTGACATTTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.296	100	0.963