Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   HG583_RS00210 Genome accession   NZ_CP051533
Coordinates   38461..39444 (+) Length   327 a.a.
NCBI ID   WP_202142989.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-010     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 33461..44444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG583_RS00180 (HG583_00180) panD 34876..35226 (+) 351 WP_108593697.1 aspartate 1-decarboxylase -
  HG583_RS00185 (HG583_00185) - 35238..35540 (+) 303 WP_000347928.1 YbaB/EbfC family nucleoid-associated protein -
  HG583_RS00190 (HG583_00190) - 35540..36535 (+) 996 WP_202143421.1 PDZ domain-containing protein -
  HG583_RS00195 (HG583_00195) comB6 36543..37598 (+) 1056 WP_202143420.1 P-type conjugative transfer protein TrbL Machinery gene
  HG583_RS00200 (HG583_00200) comB7 37614..37727 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HG583_RS00205 (HG583_00205) comB8 37724..38461 (+) 738 WP_202142988.1 virB8 family protein Machinery gene
  HG583_RS00210 (HG583_00210) comB9 38461..39444 (+) 984 WP_202142989.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG583_RS00215 (HG583_00215) comB10 39437..40573 (+) 1137 WP_202142990.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG583_RS00220 (HG583_00220) - 40643..42055 (+) 1413 WP_202142991.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG583_RS00225 (HG583_00225) gmd 42111..43256 (+) 1146 WP_000659875.1 GDP-mannose 4,6-dehydratase -
  HG583_RS00230 (HG583_00230) - 43249..44181 (+) 933 WP_079298292.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37805.68 Da        Isoelectric Point: 9.7761

>NTDB_id=439532 HG583_RS00210 WP_202142989.1 38461..39444(+) (comB9) [Helicobacter pylori strain LIM-010]
MRKVLYALMGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQKENKENMAENAPKDAQKNNKPLKEEKEETKEKEEVIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWYCLW
ACSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRF
IKRSKGE

Nucleotide


Download         Length: 984 bp        

>NTDB_id=439532 HG583_RS00210 WP_202142989.1 38461..39444(+) (comB9) [Helicobacter pylori strain LIM-010]
ATGCGTAAGGTTTTATACGCTCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACCTTGAACATTGATTATTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
CAACGATCGTATTTTACTCATCAAACCCTTACAAATCGGCGTGGATTCTAATATCAGCGTGATTGACAATGAGGGCAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGTTCCAAACACCCTAATTTGCAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTTTGAAACCCCAAAAAGAAAATAAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCAAAA
AAATAATAAGCCCCTAAAAGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAGGTGATAATTATTGGCGATAACACCAACG
CGATGAAAATTATTAAAAAAGACATCCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTATGG
GCTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTAAAGAAATTTTTAACGATAAACAATTCACTTATTTCAAATTTGA
CAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTG
TGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATCTGTGCATCCGTTTT
ATCAAAAGGAGCAAAGGTGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

90.244

100

0.905