Detailed information NTG0439529

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG583_RS00195
• Genome accession: NZ_CP051533
• Coordinates: 36543..37598 (+)
• Length: 351 a.a.
• NCBI ID: WP_202143420.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-010
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31543..42598

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG583_RS00165 (HG583_00165)	-	31958..32371 (+)	414	WP_001023008.1	universal stress protein	-
HG583_RS00170 (HG583_00170)	-	32386..32661 (+)	276	WP_078269997.1	ATP-dependent Clp protease adaptor ClpS	-
HG583_RS00175 (HG583_00175)	-	32661..34886 (+)	2226	WP_202142987.1	ATP-dependent Clp protease ATP-binding subunit	-
HG583_RS00180 (HG583_00180)	panD	34876..35226 (+)	351	WP_108593697.1	aspartate 1-decarboxylase	-
HG583_RS00185 (HG583_00185)	-	35238..35540 (+)	303	WP_000347928.1	YbaB/EbfC family nucleoid-associated protein	-
HG583_RS00190 (HG583_00190)	-	35540..36535 (+)	996	WP_202143421.1	PDZ domain-containing protein	-
HG583_RS00195 (HG583_00195)	comB6	36543..37598 (+)	1056	WP_202143420.1	P-type conjugative transfer protein TrbL	Machinery gene
HG583_RS00200 (HG583_00200)	comB7	37614..37727 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HG583_RS00205 (HG583_00205)	comB8	37724..38461 (+)	738	WP_202142988.1	virB8 family protein	Machinery gene
HG583_RS00210 (HG583_00210)	comB9	38461..39444 (+)	984	WP_202142989.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG583_RS00215 (HG583_00215)	comB10	39437..40573 (+)	1137	WP_202142990.1	DNA type IV secretion system protein ComB10	Machinery gene
HG583_RS00220 (HG583_00220)	-	40643..42055 (+)	1413	WP_202142991.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39711.68 Da
• Isoelectric Point: 9.0413

>NTDB_id=439529 HG583_RS00195 WP_202143420.1 36543..37598(+) (comB6) [Helicobacter pylori strain LIM-010]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVIMCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439529 HG583_RS00195 WP_202143420.1 36543..37598(+) (comB6) [Helicobacter pylori strain LIM-010]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTTTTAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATCTTTATTGCGCCTAACATGATCACGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGCT
TTATTAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCAATTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTAATTATGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTATAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCGTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTCAATTCCTTACAATACATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.442	100	0.954