Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   HG420_RS12440 Genome accession   NZ_CP051518
Coordinates   1634333..1634845 (-) Length   170 a.a.
NCBI ID   WP_228763816.1    Uniprot ID   -
Organism   Lactococcus cremoris strain F     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1629333..1639845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG420_RS08210 (HG420_08220) - 1630495..1631448 (+) 954 WP_015082369.1 PhoH family protein -
  HG420_RS08215 (HG420_08225) - 1631518..1632012 (+) 495 WP_015082370.1 NUDIX hydrolase -
  HG420_RS08220 (HG420_08230) ybeY 1632103..1632591 (+) 489 WP_011835335.1 rRNA maturation RNase YbeY -
  HG420_RS08225 (HG420_08235) - 1632575..1633030 (+) 456 WP_015082371.1 diacylglycerol kinase -
  HG420_RS08230 (HG420_08240) - 1633047..1633625 (+) 579 WP_015082372.1 nucleotidyltransferase family protein -
  HG420_RS08235 (HG420_08245) comFC 1633683..1634333 (-) 651 WP_015082373.1 ComF family protein Machinery gene
  HG420_RS12440 comFA 1634333..1634845 (-) 513 WP_228763816.1 helicase-related protein Machinery gene
  HG420_RS12445 comFA 1634842..1635627 (-) 786 WP_228763967.1 DEAD/DEAH box helicase family protein Machinery gene
  HG420_RS08245 (HG420_08255) - 1635684..1636319 (+) 636 WP_015082374.1 YigZ family protein -
  HG420_RS08250 (HG420_08260) - 1636361..1636861 (+) 501 WP_168784118.1 VanZ family protein -
  HG420_RS08255 (HG420_08265) - 1636948..1637946 (+) 999 WP_237025417.1 DUF475 domain-containing protein -
  HG420_RS08260 (HG420_08270) - 1638055..1638822 (+) 768 WP_011676099.1 5'-nucleotidase -
  HG420_RS08265 (HG420_08275) - 1639059..1639706 (+) 648 WP_011676100.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19592.03 Da        Isoelectric Point: 10.7775

>NTDB_id=439489 HG420_RS12440 WP_228763816.1 1634333..1634845(-) (comFA) [Lactococcus cremoris strain F]
MKLNDFFYHAAFTVILWSFQCFFWKKTFYKKFIEQRKTGFPLLIFVAEIDFGQDFAKNLQEKFPKEKMAFVASTTKSKKT
IVEAFRKKQVSILITTSILERGVTFSSIDVFVINSEHPNFTKSALIQMAGRVGRDSKRPTGLVSFFHSGKSLAMCQAQKE
IKKMNRLGGF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=439489 HG420_RS12440 WP_228763816.1 1634333..1634845(-) (comFA) [Lactococcus cremoris strain F]
ATGAAATTAAACGACTTTTTTTACCACGCCGCTTTCACGGTCATCCTTTGGTCATTCCAATGTTTTTTTTGGAAAAAAAC
ATTTTATAAAAAATTCATTGAGCAAAGAAAGACTGGTTTCCCACTTCTAATTTTCGTTGCCGAAATCGACTTTGGTCAAG
ACTTTGCCAAAAATTTACAAGAAAAATTTCCAAAAGAAAAAATGGCTTTTGTCGCTTCAACAACTAAAAGCAAAAAAACG
ATTGTCGAAGCTTTTCGCAAGAAACAAGTTTCGATTTTAATTACGACTTCTATTCTTGAACGAGGCGTAACTTTTTCTTC
GATTGATGTTTTTGTCATTAATAGCGAACACCCTAATTTCACAAAATCTGCCCTCATTCAAATGGCCGGACGAGTGGGAC
GCGACTCTAAACGTCCAACAGGTTTAGTTAGTTTTTTTCACTCTGGAAAATCTTTAGCCATGTGTCAAGCTCAGAAAGAA
ATTAAAAAAATGAACCGACTCGGAGGTTTTTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(30-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

99.329

87.647

0.871
  comFA/cflA Streptococcus mitis SK321

49.068

94.706

0.465
  comFA/cflA Streptococcus pneumoniae R6

52.817

83.529

0.441
  comFA/cflA Streptococcus pneumoniae TIGR4

52.817

83.529

0.441
  comFA/cflA Streptococcus pneumoniae D39

52.817

83.529

0.441
  comFA/cflA Streptococcus pneumoniae Rx1

52.817

83.529

0.441
  comFA/cflA Streptococcus mitis NCTC 12261

52.113

83.529

0.435