Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   HG420_RS11135 Genome accession   NZ_CP051518
Coordinates   2235081..2236064 (-) Length   327 a.a.
NCBI ID   WP_015082718.1    Uniprot ID   -
Organism   Lactococcus cremoris strain F     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2230081..2241064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG420_RS11120 (HG420_11135) - 2231433..2232359 (-) 927 WP_014572243.1 peptidyl-prolyl cis-trans isomerase -
  HG420_RS11125 (HG420_11140) - 2232515..2233198 (-) 684 WP_011676723.1 O-methyltransferase -
  HG420_RS11130 (HG420_11145) pepF 2233201..2235006 (-) 1806 WP_081172469.1 oligoendopeptidase F Regulator
  HG420_RS11135 (HG420_11150) coiA 2235081..2236064 (-) 984 WP_015082718.1 competence protein CoiA family protein Machinery gene
  HG420_RS11140 (HG420_11155) - 2236139..2237225 (-) 1087 Protein_2180 YdcF family protein -
  HG420_RS11145 (HG420_11160) - 2237379..2237966 (-) 588 WP_014572239.1 alpha/beta hydrolase -
  HG420_RS12680 - 2238005..2238202 (-) 198 WP_250638141.1 alpha/beta hydrolase -
  HG420_RS11150 (HG420_11165) - 2238435..2239856 (-) 1422 WP_015082720.1 NCS2 family permease -
  HG420_RS11155 (HG420_11170) - 2240162..2240998 (+) 837 WP_015082721.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 39120.92 Da        Isoelectric Point: 9.8805

>NTDB_id=439485 HG420_RS11135 WP_015082718.1 2235081..2236064(-) (coiA) [Lactococcus cremoris strain F]
MLTAIDENNKIINLLELERKELTGKFYCPSCHAELLIKNGQIKVLHFAHKSLKSCNLWLENESEQHLGLKKILYQWFKRT
DKVEIERYLPELNQRPDLLVNDKIAIKIQCSHLSIKRLKERTENYKAHGFKVLWLMGKDLWLAEQVTKLQKNLVYFSENR
GFFYWELDFQRKKLRLKSLIHEDLRGRIICLQEEIPFGKGRLIAHLRLPYLAQKLVKIPTFKDPKLSSFIRQQLYYQSPK
WMKIQEKYYQKGENLLTKKFEGPYIAPLGLNLLESFTDEMTITTFTQIDQNVKLYYENFLINFQRNSLEMLYPPCFYAIM
GKQKKEK

Nucleotide


Download         Length: 984 bp        

>NTDB_id=439485 HG420_RS11135 WP_015082718.1 2235081..2236064(-) (coiA) [Lactococcus cremoris strain F]
ATGCTGACAGCAATTGATGAAAATAATAAAATAATAAACTTACTGGAATTAGAACGCAAAGAATTGACCGGGAAATTTTA
TTGTCCTTCTTGTCATGCAGAGCTACTTATTAAAAATGGGCAGATAAAAGTTCTTCATTTTGCCCATAAATCTCTAAAGA
GCTGCAATTTATGGTTGGAAAATGAGTCAGAACAGCATTTAGGTTTGAAAAAAATATTATATCAGTGGTTTAAAAGGACT
GACAAAGTCGAAATTGAACGCTATTTGCCCGAACTTAACCAAAGACCAGATTTATTAGTAAATGACAAAATCGCTATTAA
GATACAATGCTCTCATTTATCTATTAAGCGCCTCAAAGAACGTACAGAAAATTATAAGGCGCATGGCTTTAAAGTGCTTT
GGTTGATGGGAAAGGATTTATGGCTGGCTGAACAGGTGACAAAACTTCAAAAAAATTTAGTTTATTTCTCGGAAAATAGA
GGATTCTTTTATTGGGAGTTAGATTTTCAGAGGAAAAAATTAAGATTAAAATCTCTTATTCATGAGGATTTACGCGGCAG
AATCATTTGCTTACAAGAGGAAATTCCTTTTGGAAAAGGACGACTTATTGCGCATCTACGCTTACCTTATTTGGCGCAAA
AACTGGTGAAAATTCCTACTTTTAAAGATCCTAAACTTTCTAGTTTTATTCGTCAGCAATTATACTATCAATCACCAAAA
TGGATGAAAATTCAAGAAAAATATTATCAAAAAGGAGAAAATTTACTGACGAAAAAATTTGAAGGTCCATACATTGCTCC
ACTAGGTTTAAATTTACTAGAGAGTTTTACTGACGAAATGACGATCACAACTTTTACTCAGATTGATCAAAATGTTAAGC
TTTACTATGAAAATTTTTTAATAAATTTCCAAAGAAATAGCCTTGAAATGCTCTATCCTCCCTGTTTCTATGCTATAATG
GGAAAGCAGAAGAAGGAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

96.942

100

0.969
  coiA Streptococcus mitis NCTC 12261

44.136

99.083

0.437
  coiA Streptococcus pneumoniae TIGR4

42.901

99.083

0.425
  coiA Streptococcus pneumoniae Rx1

42.901

99.083

0.425
  coiA Streptococcus pneumoniae D39

42.901

99.083

0.425
  coiA Streptococcus pneumoniae R6

42.901

99.083

0.425