Detailed information NTG0439391

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG557_RS00210
• Genome accession: NZ_CP051510
• Coordinates: 35361..36497 (+)
• Length: 378 a.a.
• NCBI ID: WP_202135613.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ASHA-008
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 30361..41497

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG557_RS00175 (HG557_00175)	panD	30812..31162 (+)	351	WP_029647093.1	aspartate 1-decarboxylase	-
HG557_RS00180 (HG557_00180)	-	31173..31466 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HG557_RS00185 (HG557_00185)	-	31466..32473 (+)	1008	WP_202133382.1	PDZ domain-containing protein	-
HG557_RS00190 (HG557_00190)	comB6	32479..33534 (+)	1056	WP_202135611.1	P-type conjugative transfer protein TrbL	Machinery gene
HG557_RS00195 (HG557_00195)	comB7	33550..33663 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
HG557_RS00200 (HG557_00200)	comB8	33660..34403 (+)	744	WP_202135612.1	virB8 family protein	Machinery gene
HG557_RS00205 (HG557_00205)	comB9	34403..35368 (+)	966	WP_202166060.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG557_RS00210 (HG557_00210)	comB10	35361..36497 (+)	1137	WP_202135613.1	DNA type IV secretion system protein ComB10	Machinery gene
HG557_RS00215 (HG557_00215)	-	36567..37979 (+)	1413	WP_202166062.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HG557_RS00220 (HG557_00220)	gmd	38007..39152 (+)	1146	WP_015645819.1	GDP-mannose 4,6-dehydratase	-
HG557_RS00225 (HG557_00225)	-	39145..40077 (+)	933	WP_001002423.1	GDP-L-fucose synthase	-
HG557_RS00230 (HG557_00230)	hypE	40335..41333 (-)	999	WP_202166071.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42213.90 Da
• Isoelectric Point: 9.9555

>NTDB_id=439391 HG557_RS00210 WP_202135613.1 35361..36497(+) (comB10) [Helicobacter pylori strain ASHA-008]
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKANTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEYATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=439391 HG557_RS00210 WP_202135613.1 35361..36497(+) (comB10) [Helicobacter pylori strain ASHA-008]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATCATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCTCCCCTAAATAACCAGCCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCCTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAATCCTCCCATAGATTTAAAAGC
AAACACAACACCCCCTAAAAAAGACTTTTCTTTAAAGCAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCTCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAATAGAGGCAATAAAGAATATGCGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAAGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCAAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.032	100	0.96