Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   HG557_RS00205 Genome accession   NZ_CP051510
Coordinates   34403..35368 (+) Length   321 a.a.
NCBI ID   WP_202166060.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-008     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 29403..40368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG557_RS00175 (HG557_00175) panD 30812..31162 (+) 351 WP_029647093.1 aspartate 1-decarboxylase -
  HG557_RS00180 (HG557_00180) - 31173..31466 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  HG557_RS00185 (HG557_00185) - 31466..32473 (+) 1008 WP_202133382.1 PDZ domain-containing protein -
  HG557_RS00190 (HG557_00190) comB6 32479..33534 (+) 1056 WP_202135611.1 P-type conjugative transfer protein TrbL Machinery gene
  HG557_RS00195 (HG557_00195) comB7 33550..33663 (+) 114 WP_001218100.1 hypothetical protein Machinery gene
  HG557_RS00200 (HG557_00200) comB8 33660..34403 (+) 744 WP_202135612.1 virB8 family protein Machinery gene
  HG557_RS00205 (HG557_00205) comB9 34403..35368 (+) 966 WP_202166060.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG557_RS00210 (HG557_00210) comB10 35361..36497 (+) 1137 WP_202135613.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG557_RS00215 (HG557_00215) - 36567..37979 (+) 1413 WP_202166062.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG557_RS00220 (HG557_00220) gmd 38007..39152 (+) 1146 WP_015645819.1 GDP-mannose 4,6-dehydratase -
  HG557_RS00225 (HG557_00225) - 39145..40077 (+) 933 WP_001002423.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 36948.51 Da        Isoelectric Point: 9.4632

>NTDB_id=439390 HG557_RS00205 WP_202166060.1 34403..35368(+) (comB9) [Helicobacter pylori strain ASHA-008]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNVSVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKGNTLENTPTNNSKPLKEEKEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLWICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide


Download         Length: 966 bp        

>NTDB_id=439390 HG557_RS00205 WP_202166060.1 34403..35368(+) (comB9) [Helicobacter pylori strain ASHA-008]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGACAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATGTCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGGAAATACCCTTGAAAATACCCCCACAAACAACAGCAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAGCACTAATGCGATGAAAATCGTTAAAA
AAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCTAAAAAATCC
AAGCTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

92.355

100

0.941