Detailed information NTG0439387

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG557_RS00190
• Genome accession: NZ_CP051510
• Coordinates: 32479..33534 (+)
• Length: 351 a.a.
• NCBI ID: WP_202135611.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ASHA-008
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 27479..38534

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG557_RS00160 (HG557_00160)	-	27904..28317 (+)	414	WP_097682194.1	universal stress protein	-
HG557_RS00165 (HG557_00165)	-	28325..28600 (+)	276	WP_000784917.1	ATP-dependent Clp protease adaptor ClpS	-
HG557_RS00170 (HG557_00170)	-	28600..30822 (+)	2223	WP_202135610.1	ATP-dependent Clp protease ATP-binding subunit	-
HG557_RS00175 (HG557_00175)	panD	30812..31162 (+)	351	WP_029647093.1	aspartate 1-decarboxylase	-
HG557_RS00180 (HG557_00180)	-	31173..31466 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HG557_RS00185 (HG557_00185)	-	31466..32473 (+)	1008	WP_202133382.1	PDZ domain-containing protein	-
HG557_RS00190 (HG557_00190)	comB6	32479..33534 (+)	1056	WP_202135611.1	P-type conjugative transfer protein TrbL	Machinery gene
HG557_RS00195 (HG557_00195)	comB7	33550..33663 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
HG557_RS00200 (HG557_00200)	comB8	33660..34403 (+)	744	WP_202135612.1	virB8 family protein	Machinery gene
HG557_RS00205 (HG557_00205)	comB9	34403..35368 (+)	966	WP_202166060.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG557_RS00210 (HG557_00210)	comB10	35361..36497 (+)	1137	WP_202135613.1	DNA type IV secretion system protein ComB10	Machinery gene
HG557_RS00215 (HG557_00215)	-	36567..37979 (+)	1413	WP_202166062.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39765.74 Da
• Isoelectric Point: 9.0413

>NTDB_id=439387 HG557_RS00190 WP_202135611.1 32479..33534(+) (comB6) [Helicobacter pylori strain ASHA-008]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVVCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439387 HG557_RS00190 WP_202135611.1 32479..33534(+) (comB6) [Helicobacter pylori strain ASHA-008]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAATTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAATATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGTTTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	98.291	100	0.983