Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HG557_RS00200 Genome accession   NZ_CP051510
Coordinates   33660..34403 (+) Length   247 a.a.
NCBI ID   WP_202135612.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-008     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 28660..39403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG557_RS00175 (HG557_00175) panD 30812..31162 (+) 351 WP_029647093.1 aspartate 1-decarboxylase -
  HG557_RS00180 (HG557_00180) - 31173..31466 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  HG557_RS00185 (HG557_00185) - 31466..32473 (+) 1008 WP_202133382.1 PDZ domain-containing protein -
  HG557_RS00190 (HG557_00190) comB6 32479..33534 (+) 1056 WP_202135611.1 P-type conjugative transfer protein TrbL Machinery gene
  HG557_RS00195 (HG557_00195) comB7 33550..33663 (+) 114 WP_001218100.1 hypothetical protein Machinery gene
  HG557_RS00200 (HG557_00200) comB8 33660..34403 (+) 744 WP_202135612.1 virB8 family protein Machinery gene
  HG557_RS00205 (HG557_00205) comB9 34403..35368 (+) 966 WP_202166060.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG557_RS00210 (HG557_00210) comB10 35361..36497 (+) 1137 WP_202135613.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG557_RS00215 (HG557_00215) - 36567..37979 (+) 1413 WP_202166062.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG557_RS00220 (HG557_00220) gmd 38007..39152 (+) 1146 WP_015645819.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28642.92 Da        Isoelectric Point: 9.4814

>NTDB_id=439389 HG557_RS00200 WP_202135612.1 33660..34403(+) (comB8) [Helicobacter pylori strain ASHA-008]
MKKKPFNSEQLAFLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRSD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=439389 HG557_RS00200 WP_202135612.1 33660..34403(+) (comB8) [Helicobacter pylori strain ASHA-008]
ATGAAAAAAAAGCCTTTCAATAGCGAGCAGTTGGCTTTTTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTCAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGTTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTGATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGTTTTGAAGATTTGATTAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAATGAAAACAAGCTAGTTTATGAAAAGCGTTATAAAATCGTGTTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCCAAAAACCCTACCGGTTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGAGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.356

100

0.964