Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SBAL678_RS26345 Genome accession   NC_016901
Coordinates   670823..671527 (+) Length   234 a.a.
NCBI ID   WP_006083192.1    Uniprot ID   A0A9X2WXK9
Organism   Shewanella baltica OS678     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 665823..676527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBAL678_RS26335 (Sbal678_0590) uvrA 666048..668930 (-) 2883 WP_006083194.1 excinuclease ABC subunit UvrA -
  SBAL678_RS26340 (Sbal678_0591) - 669346..670713 (+) 1368 WP_006083193.1 MFS transporter -
  SBAL678_RS26345 (Sbal678_0592) ssb 670823..671527 (+) 705 WP_006083192.1 single-stranded DNA-binding protein Machinery gene
  SBAL678_RS26350 (Sbal678_0593) - 671703..673025 (+) 1323 WP_006083191.1 site-specific integrase -
  SBAL678_RS26355 (Sbal678_0594) - 673009..674562 (+) 1554 WP_006083190.1 site-specific integrase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25189.73 Da        Isoelectric Point: 5.2341

>NTDB_id=43932 SBAL678_RS26345 WP_006083192.1 670823..671527(+) (ssb) [Shewanella baltica OS678]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRGQGGQAQGAPMGGGMPQNAGYQSAPQQAAPAQNQYAPAPQAAPAY
QAPAQQQYAAPAPAQQQYGQQQAQPQQGGYAPKPQAAPAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 705 bp        

>NTDB_id=43932 SBAL678_RS26345 WP_006083192.1 670823..671527(+) (ssb) [Shewanella baltica OS678]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTGCGTTATATGCCAAACGG
TAATGCAGTCGCTAACATCACAGTTGCGACCAGCGAATCGTGGAAAGACCAACAAGGTCAACAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTTCTGTTCGGCAAATTAGCTGAAATTACAGGTGAATACCTGCGTAAAGGTTCACAGGTTTACCTCGAA
GGTAAACTGCAAACCCGTAAGTGGAAAGACCAAAGCGGTCAAGACCGTTACAGCACTGAAGTGGTTATCGATCAAAGCGG
TAGCATGCAAATGCTAGGTAGCCGTGGTCAAGGTGGCCAAGCACAAGGCGCGCCAATGGGTGGCGGCATGCCACAAAATG
CAGGTTACCAATCTGCACCACAACAAGCGGCACCAGCGCAAAATCAATATGCGCCAGCGCCTCAAGCTGCACCAGCTTAC
CAAGCGCCAGCTCAGCAACAATATGCTGCGCCAGCACCTGCTCAGCAGCAATATGGACAGCAACAAGCTCAACCACAACA
AGGTGGTTATGCGCCTAAGCCACAAGCCGCTCCAGCGCCTGCTTACCAAGCGCCAGCAGCACCGGCACAACGTCCTGCAC
CACAACCACAGCAAAACTTCACTCCAGATTTGGATGATGGCTGGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

64.571

74.786

0.483
  ssb Glaesserella parasuis strain SC1401

45.022

98.718

0.444
  ssb Neisseria meningitidis MC58

41.558

98.718

0.41
  ssb Neisseria gonorrhoeae MS11

40.693

98.718

0.402

Multiple sequence alignment