Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HG567_RS00215 | Genome accession | NZ_CP051500 |
| Coordinates | 39147..40283 (+) | Length | 378 a.a. |
| NCBI ID | WP_202139741.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain PUNO-003 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 34147..45283
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG567_RS00180 (HG567_00180) | panD | 34580..34933 (+) | 354 | WP_000142250.1 | aspartate 1-decarboxylase | - |
| HG567_RS00185 (HG567_00185) | - | 34936..35238 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HG567_RS00190 (HG567_00190) | - | 35238..36242 (+) | 1005 | WP_202140206.1 | PDZ domain-containing protein | - |
| HG567_RS00195 (HG567_00195) | comB6 | 36250..37305 (+) | 1056 | WP_202140205.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HG567_RS00200 (HG567_00200) | comB7 | 37321..37434 (+) | 114 | WP_001217868.1 | hypothetical protein | Machinery gene |
| HG567_RS00205 (HG567_00205) | comB8 | 37431..38174 (+) | 744 | WP_202139739.1 | virB8 family protein | Machinery gene |
| HG567_RS00210 (HG567_00210) | comB9 | 38174..39154 (+) | 981 | WP_202139740.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HG567_RS00215 (HG567_00215) | comB10 | 39147..40283 (+) | 1137 | WP_202139741.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HG567_RS00220 (HG567_00220) | - | 40353..41750 (+) | 1398 | WP_202139742.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HG567_RS00225 (HG567_00225) | gmd | 41806..42951 (+) | 1146 | WP_202139743.1 | GDP-mannose 4,6-dehydratase | - |
| HG567_RS00230 (HG567_00230) | - | 42944..43876 (+) | 933 | WP_202139744.1 | GDP-L-fucose synthase | - |
| HG567_RS00235 (HG567_00235) | hypE | 44166..45164 (-) | 999 | WP_202139745.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42108.70 Da Isoelectric Point: 9.9021
>NTDB_id=439177 HG567_RS00215 WP_202139741.1 39147..40283(+) (comB10) [Helicobacter pylori strain PUNO-003]
MNKWLKGALIVAGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGALIVAGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=439177 HG567_RS00215 WP_202139741.1 39147..40283(+) (comB10) [Helicobacter pylori strain PUNO-003]
ATGAATAAGTGGCTTAAGGGAGCGTTGATTGTTGCAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCTAAAGAAGAGACTTTTACTAGCCCTCCCATGGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCCTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAA
TCCCCAAAGGCTCTAAGGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGAGCGTTGATTGTTGCAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCTAAAGAAGAGACTTTTACTAGCCCTCCCATGGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCCTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAA
TCCCCAAAGGCTCTAAGGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
97.09 |
100 |
0.971 |