Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HG567_RS00205 Genome accession   NZ_CP051500
Coordinates   37431..38174 (+) Length   247 a.a.
NCBI ID   WP_202139739.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-003     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32431..43174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG567_RS00180 (HG567_00180) panD 34580..34933 (+) 354 WP_000142250.1 aspartate 1-decarboxylase -
  HG567_RS00185 (HG567_00185) - 34936..35238 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  HG567_RS00190 (HG567_00190) - 35238..36242 (+) 1005 WP_202140206.1 PDZ domain-containing protein -
  HG567_RS00195 (HG567_00195) comB6 36250..37305 (+) 1056 WP_202140205.1 P-type conjugative transfer protein TrbL Machinery gene
  HG567_RS00200 (HG567_00200) comB7 37321..37434 (+) 114 WP_001217868.1 hypothetical protein Machinery gene
  HG567_RS00205 (HG567_00205) comB8 37431..38174 (+) 744 WP_202139739.1 virB8 family protein Machinery gene
  HG567_RS00210 (HG567_00210) comB9 38174..39154 (+) 981 WP_202139740.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG567_RS00215 (HG567_00215) comB10 39147..40283 (+) 1137 WP_202139741.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG567_RS00220 (HG567_00220) - 40353..41750 (+) 1398 WP_202139742.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG567_RS00225 (HG567_00225) gmd 41806..42951 (+) 1146 WP_202139743.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28711.94 Da        Isoelectric Point: 8.9830

>NTDB_id=439175 HG567_RS00205 WP_202139739.1 37431..38174(+) (comB8) [Helicobacter pylori strain PUNO-003]
MKEKPFNSEQLAFLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=439175 HG567_RS00205 WP_202139739.1 37431..38174(+) (comB8) [Helicobacter pylori strain PUNO-003]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGGCTTTTTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGACTGGAGAGAAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTATCTTAGCGATCGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATCTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCCATTGCCGCTAAACTAATGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTATTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968