Detailed information NTG0439173

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG567_RS00195
• Genome accession: NZ_CP051500
• Coordinates: 36250..37305 (+)
• Length: 351 a.a.
• NCBI ID: WP_202140205.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PUNO-003
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31250..42305

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG567_RS00165 (HG567_00165)	-	31641..32054 (+)	414	WP_001023008.1	universal stress protein	-
HG567_RS00170 (HG567_00170)	-	32090..32365 (+)	276	WP_202140204.1	ATP-dependent Clp protease adaptor ClpS	-
HG567_RS00175 (HG567_00175)	-	32365..34590 (+)	2226	WP_202163832.1	ATP-dependent Clp protease ATP-binding subunit	-
HG567_RS00180 (HG567_00180)	panD	34580..34933 (+)	354	WP_000142250.1	aspartate 1-decarboxylase	-
HG567_RS00185 (HG567_00185)	-	34936..35238 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HG567_RS00190 (HG567_00190)	-	35238..36242 (+)	1005	WP_202140206.1	PDZ domain-containing protein	-
HG567_RS00195 (HG567_00195)	comB6	36250..37305 (+)	1056	WP_202140205.1	P-type conjugative transfer protein TrbL	Machinery gene
HG567_RS00200 (HG567_00200)	comB7	37321..37434 (+)	114	WP_001217868.1	hypothetical protein	Machinery gene
HG567_RS00205 (HG567_00205)	comB8	37431..38174 (+)	744	WP_202139739.1	virB8 family protein	Machinery gene
HG567_RS00210 (HG567_00210)	comB9	38174..39154 (+)	981	WP_202139740.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG567_RS00215 (HG567_00215)	comB10	39147..40283 (+)	1137	WP_202139741.1	DNA type IV secretion system protein ComB10	Machinery gene
HG567_RS00220 (HG567_00220)	-	40353..41750 (+)	1398	WP_202139742.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39727.67 Da
• Isoelectric Point: 9.0413

>NTDB_id=439173 HG567_RS00195 WP_202140205.1 36250..37305(+) (comB6) [Helicobacter pylori strain PUNO-003]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALLETLLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439173 HG567_RS00195 WP_202140205.1 36250..37305(+) (comB6) [Helicobacter pylori strain PUNO-003]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTTTTCAGCACTAGCGCGCTTTTAGAGACGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGTGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTGGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.866	100	0.969