Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   HG567_RS00210 Genome accession   NZ_CP051500
Coordinates   38174..39154 (+) Length   326 a.a.
NCBI ID   WP_202139740.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-003     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 33174..44154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG567_RS00180 (HG567_00180) panD 34580..34933 (+) 354 WP_000142250.1 aspartate 1-decarboxylase -
  HG567_RS00185 (HG567_00185) - 34936..35238 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  HG567_RS00190 (HG567_00190) - 35238..36242 (+) 1005 WP_202140206.1 PDZ domain-containing protein -
  HG567_RS00195 (HG567_00195) comB6 36250..37305 (+) 1056 WP_202140205.1 P-type conjugative transfer protein TrbL Machinery gene
  HG567_RS00200 (HG567_00200) comB7 37321..37434 (+) 114 WP_001217868.1 hypothetical protein Machinery gene
  HG567_RS00205 (HG567_00205) comB8 37431..38174 (+) 744 WP_202139739.1 virB8 family protein Machinery gene
  HG567_RS00210 (HG567_00210) comB9 38174..39154 (+) 981 WP_202139740.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG567_RS00215 (HG567_00215) comB10 39147..40283 (+) 1137 WP_202139741.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG567_RS00220 (HG567_00220) - 40353..41750 (+) 1398 WP_202139742.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG567_RS00225 (HG567_00225) gmd 41806..42951 (+) 1146 WP_202139743.1 GDP-mannose 4,6-dehydratase -
  HG567_RS00230 (HG567_00230) - 42944..43876 (+) 933 WP_202139744.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37695.37 Da        Isoelectric Point: 9.2036

>NTDB_id=439176 HG567_RS00210 WP_202139740.1 38174..39154(+) (comB9) [Helicobacter pylori strain PUNO-003]
MRKVLYALMGFLLAFSVLRADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQNKENVLENTLENAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLWA
CSKKSKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFI
KRAKDE

Nucleotide


Download         Length: 981 bp        

>NTDB_id=439176 HG567_RS00210 WP_202139740.1 38174..39154(+) (comB9) [Helicobacter pylori strain PUNO-003]
ATGCGTAAGGTTTTATATGCCCTCATGGGCTTTTTGTTGGCTTTTAGCGTTTTAAGAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTATTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACTTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGATTTGACGCGAAAATCTTAGAAAG
TAACGATCGTATTTTACTCATCAAACCCTTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAGCGAAGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTTATAGAAGATAAAAAC
TATTATTCTAACGCTTTTTTGAAGCCGCAAAATAAAGAAAATGTCCTTGAAAATACCCTTGAAAATGCCCCCACAAACAA
CAAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACTAATGCGA
TGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTATGGGCT
TGTTCTAAAAAATCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAA
AAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTAG
GCGATTACATTATCGCTGAAGATGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATCTGTGCATCCGTTTTATC
AAAAGGGCTAAAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

95.706

100

0.957