Detailed information NTG0439023

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HG579_RS00210
• Genome accession: NZ_CP051493
• Coordinates: 38515..39504 (+)
• Length: 329 a.a.
• NCBI ID: WP_202133911.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-006
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33515..44504

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG579_RS00180 (HG579_00180)	panD	34930..35283 (+)	354	WP_000142243.1	aspartate 1-decarboxylase	-
HG579_RS00185 (HG579_00185)	-	35286..35579 (+)	294	WP_000347915.1	YbaB/EbfC family nucleoid-associated protein	-
HG579_RS00190 (HG579_00190)	-	35579..36583 (+)	1005	WP_202133909.1	PDZ domain-containing protein	-
HG579_RS00195 (HG579_00195)	comB6	36591..37646 (+)	1056	WP_202133910.1	P-type conjugative transfer protein TrbL	Machinery gene
HG579_RS00200 (HG579_00200)	comB7	37662..37775 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HG579_RS00205 (HG579_00205)	comB8	37772..38515 (+)	744	WP_108374430.1	virB8 family protein	Machinery gene
HG579_RS00210 (HG579_00210)	comB9	38515..39504 (+)	990	WP_202133911.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG579_RS00215 (HG579_00215)	comB10	39497..40633 (+)	1137	WP_202133912.1	DNA type IV secretion system protein ComB10	Machinery gene
HG579_RS00220 (HG579_00220)	-	40704..42119 (+)	1416	WP_202133913.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HG579_RS00225 (HG579_00225)	gmd	42144..43289 (+)	1146	WP_202133914.1	GDP-mannose 4,6-dehydratase	-
HG579_RS00230 (HG579_00230)	-	43282..44214 (+)	933	WP_202133915.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37993.69 Da
• Isoelectric Point: 9.3413

>NTDB_id=439023 HG579_RS00210 WP_202133911.1 38515..39504(+) (comB9) [Helicobacter pylori strain LIM-006]
MRKVLYALMGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENQENMAENAPKDAPTNNNKPLKEEKEETKEKEEETIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWYC
LWACSKKSKLSLMPEEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCI
RFVKRSKGE

Nucleotide

• Length: 990 bp

>NTDB_id=439023 HG579_RS00210 WP_202133911.1 38515..39504(+) (comB9) [Helicobacter pylori strain LIM-006]
ATGCGTAAGGTTTTATATGCCCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATCAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCCCAC
AAACAACAACAAACCCTTAAAAGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAAACTATAATTATTGGCGATAACA
CCAACGCGATGAAAATTATTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGT
TTATGGGCTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTGAAGAAATCTTTAACGACAAACAATTCACTTATTTCAA
ATTTGACAAAAGGTTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAA
GGATTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATC
CGTTTTGTCAAAAGGAGCAAAGGTGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-320)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.705	100	0.927