Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HG579_RS00205 Genome accession   NZ_CP051493
Coordinates   37772..38515 (+) Length   247 a.a.
NCBI ID   WP_108374430.1    Uniprot ID   A0A2T6QUJ2
Organism   Helicobacter pylori strain LIM-006     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32772..43515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG579_RS00180 (HG579_00180) panD 34930..35283 (+) 354 WP_000142243.1 aspartate 1-decarboxylase -
  HG579_RS00185 (HG579_00185) - 35286..35579 (+) 294 WP_000347915.1 YbaB/EbfC family nucleoid-associated protein -
  HG579_RS00190 (HG579_00190) - 35579..36583 (+) 1005 WP_202133909.1 PDZ domain-containing protein -
  HG579_RS00195 (HG579_00195) comB6 36591..37646 (+) 1056 WP_202133910.1 P-type conjugative transfer protein TrbL Machinery gene
  HG579_RS00200 (HG579_00200) comB7 37662..37775 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HG579_RS00205 (HG579_00205) comB8 37772..38515 (+) 744 WP_108374430.1 virB8 family protein Machinery gene
  HG579_RS00210 (HG579_00210) comB9 38515..39504 (+) 990 WP_202133911.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG579_RS00215 (HG579_00215) comB10 39497..40633 (+) 1137 WP_202133912.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG579_RS00220 (HG579_00220) - 40704..42119 (+) 1416 WP_202133913.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG579_RS00225 (HG579_00225) gmd 42144..43289 (+) 1146 WP_202133914.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28696.91 Da        Isoelectric Point: 8.9546

>NTDB_id=439022 HG579_RS00205 WP_108374430.1 37772..38515(+) (comB8) [Helicobacter pylori strain LIM-006]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLTNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=439022 HG579_RS00205 WP_108374430.1 37772..38515(+) (comB8) [Helicobacter pylori strain LIM-006]
ATGAAAGAAAAGCCTTTCAACAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTTCGGTTGGAAAGGAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGCTTTATCGCTCTTATCTTAGCGATCGTGTTAATCAGTATCCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGCTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGTATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
ATCCATTGCAGCTAAACTAACGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTATTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAACAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T6QUJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.976

100

0.98