Detailed information NTG0439020

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG579_RS00195
• Genome accession: NZ_CP051493
• Coordinates: 36591..37646 (+)
• Length: 351 a.a.
• NCBI ID: WP_202133910.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-006
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31591..42646

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG579_RS00165 (HG579_00165)	-	32013..32426 (+)	414	WP_001023005.1	universal stress protein	-
HG579_RS00170 (HG579_00170)	-	32440..32715 (+)	276	WP_202134375.1	ATP-dependent Clp protease adaptor ClpS	-
HG579_RS00175 (HG579_00175)	-	32715..34940 (+)	2226	WP_202133908.1	ATP-dependent Clp protease ATP-binding subunit	-
HG579_RS00180 (HG579_00180)	panD	34930..35283 (+)	354	WP_000142243.1	aspartate 1-decarboxylase	-
HG579_RS00185 (HG579_00185)	-	35286..35579 (+)	294	WP_000347915.1	YbaB/EbfC family nucleoid-associated protein	-
HG579_RS00190 (HG579_00190)	-	35579..36583 (+)	1005	WP_202133909.1	PDZ domain-containing protein	-
HG579_RS00195 (HG579_00195)	comB6	36591..37646 (+)	1056	WP_202133910.1	P-type conjugative transfer protein TrbL	Machinery gene
HG579_RS00200 (HG579_00200)	comB7	37662..37775 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HG579_RS00205 (HG579_00205)	comB8	37772..38515 (+)	744	WP_108374430.1	virB8 family protein	Machinery gene
HG579_RS00210 (HG579_00210)	comB9	38515..39504 (+)	990	WP_202133911.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG579_RS00215 (HG579_00215)	comB10	39497..40633 (+)	1137	WP_202133912.1	DNA type IV secretion system protein ComB10	Machinery gene
HG579_RS00220 (HG579_00220)	-	40704..42119 (+)	1416	WP_202133913.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39723.71 Da
• Isoelectric Point: 9.0389

>NTDB_id=439020 HG579_RS00195 WP_202133910.1 36591..37646(+) (comB6) [Helicobacter pylori strain LIM-006]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYKSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVVVCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALTSLQYITTPHSPSSVSPSTSGSISKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439020 HG579_RS00195 WP_202133910.1 36591..37646(+) (comB6) [Helicobacter pylori strain LIM-006]
ATGAAACATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAAAAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTTTTAGAGGCGTTATTATTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGTGTGCTG
TTTGCGATTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGTGTGCTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACTAATTTGAGCGCTAACCTCAGCCAAAACGCTCTTACTTCCTTACAATATATCA
CGACCCCACACTCTCCTTCTAGCGTTTCTCCTTCTACAAGCGGTAGCATTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	94.302	100	0.943