Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HGP31_RS28050 Genome accession   NZ_CP051487
Coordinates   6192317..6192838 (-) Length   173 a.a.
NCBI ID   WP_020799826.1    Uniprot ID   S2ERM9
Organism   Pseudomonas umsongensis strain CY-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6187317..6197838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGP31_RS28025 (HGP31_28025) - 6187400..6188386 (+) 987 WP_020800588.1 lysylphosphatidylglycerol synthase domain-containing protein -
  HGP31_RS28030 (HGP31_28030) - 6188487..6189245 (-) 759 WP_020800587.1 alpha/beta hydrolase family protein -
  HGP31_RS28035 (HGP31_28035) - 6189235..6190344 (-) 1110 WP_020800586.1 DUF3182 family protein -
  HGP31_RS28040 (HGP31_28040) - 6190549..6191541 (-) 993 WP_168759022.1 GlxA family transcriptional regulator -
  HGP31_RS28045 (HGP31_28045) - 6191644..6192198 (+) 555 WP_168759023.1 cysteine hydrolase family protein -
  HGP31_RS28050 (HGP31_28050) ssb 6192317..6192838 (-) 522 WP_020799826.1 single-stranded DNA-binding protein Machinery gene
  HGP31_RS28055 (HGP31_28055) - 6192848..6194245 (-) 1398 WP_008065728.1 MFS transporter -
  HGP31_RS28060 (HGP31_28060) uvrA 6194437..6197271 (+) 2835 WP_020799827.1 excinuclease ABC subunit UvrA -
  HGP31_RS28065 (HGP31_28065) bfr 6197338..6197802 (-) 465 WP_008053867.1 bacterioferritin -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19188.30 Da        Isoelectric Point: 5.9314

>NTDB_id=438966 HGP31_RS28050 WP_020799826.1 6192317..6192838(-) (ssb) [Pseudomonas umsongensis strain CY-1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGQGGGNNYQQSAPRQQAPRPQQSAPQQSRPAPQQAAPQP
APDFDSFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=438966 HGP31_RS28050 WP_020799826.1 6192317..6192838(-) (ssb) [Pseudomonas umsongensis strain CY-1]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGTTACCTGCCGAATGGCAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAAGTCGAAAAAACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGTCGTCCTCAACAGGGTGACCAACAAGGCCAGGGCGGCGGTAACAACTACCAGCAATCCGCTC
CTCGCCAGCAGGCTCCGCGTCCACAGCAGTCGGCACCGCAACAGTCGCGCCCGGCTCCTCAGCAGGCCGCGCCGCAGCCA
GCTCCGGATTTCGATAGCTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S2ERM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.667

100

0.59
  ssb Glaesserella parasuis strain SC1401

49.724

100

0.52
  ssb Neisseria meningitidis MC58

47.753

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.491