Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HC660_RS11065 Genome accession   NZ_CP051464
Coordinates   2138728..2139348 (+) Length   206 a.a.
NCBI ID   WP_010334705.1    Uniprot ID   -
Organism   Bacillus mojavensis strain UCMB5075     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2133728..2144348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS11025 (HC660_21030) - 2134864..2135370 (-) 507 WP_029441333.1 PTS glucose transporter subunit IIA -
  HC660_RS11030 (HC660_21040) - 2135507..2135926 (+) 420 WP_168748104.1 Hsp20/alpha crystallin family protein -
  HC660_RS11035 (HC660_21050) - 2135948..2136322 (-) 375 WP_168748105.1 YppG family protein -
  HC660_RS11040 (HC660_21060) - 2136510..2136698 (+) 189 WP_010334700.1 YppF family protein -
  HC660_RS11045 (HC660_21070) - 2136734..2137105 (-) 372 WP_026014732.1 YppE family protein -
  HC660_RS11050 (HC660_21080) - 2137151..2137396 (-) 246 WP_168748106.1 DUF5446 family protein -
  HC660_RS11055 (HC660_21090) sspM 2137595..2137699 (+) 105 WP_010334703.1 acid-soluble spore protein SspM -
  HC660_RS11060 (HC660_21100) - 2137725..2138687 (-) 963 WP_168748107.1 DUF2515 domain-containing protein -
  HC660_RS11065 (HC660_21110) recU 2138728..2139348 (+) 621 WP_010334705.1 Holliday junction resolvase RecU Machinery gene
  HC660_RS11070 (HC660_21120) - 2139370..2142117 (+) 2748 WP_168748108.1 PBP1A family penicillin-binding protein -
  HC660_RS11075 (HC660_21130) - 2142185..2142679 (-) 495 WP_168748109.1 YpoC family protein -
  HC660_RS11080 (HC660_21140) nth 2142676..2143335 (-) 660 WP_010334708.1 endonuclease III -
  HC660_RS11085 (HC660_21150) dnaD 2143354..2144052 (-) 699 WP_168748110.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23880.98 Da        Isoelectric Point: 9.5290

>NTDB_id=438483 HC660_RS11065 WP_010334705.1 2138728..2139348(+) (recU) [Bacillus mojavensis strain UCMB5075]
MIRYPNGKTFQPKHPVSSQSSHKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNTTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEADRLFYFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=438483 HC660_RS11065 WP_010334705.1 2138728..2139348(+) (recU) [Bacillus mojavensis strain UCMB5075]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATCCGGTTTCATCCCAAAGCAGTCATAAAAGAGCGCCATC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTGA
TACACAAAAAGCCAACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCTGCAGTCATAAAAGAAGCCTAT
TTTAAGCAATCATCGACAACAGATTATAACGGAATTTATAAAGGACGGTACATTGACTTTGAGGCGAAAGAGACAAAAAA
CACAACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGGCCAGGTTTATTTTTTAGAAGCTGATAGGCTGTTTTATTTCTGGGAAAGAAAAGAA
AAAAATGGCAGAAAATCCATTCGAAAAGATGAGTTAGAGGAAGCAGCTTATCCGATTTCTCTTGGATACGCGCCAAGAAT
TGATTATATTAGTATTATTGAGCAGCTTTATTTTTCGCCATCATCAAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

95.146

100

0.951