Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IPV47_RS28385 Genome accession   NZ_CP063387
Coordinates   6099638..6100234 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain ST1076_d100blood2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6094638..6105234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV47_RS28365 (IPV47_28350) aroK 6095769..6096287 (-) 519 WP_003095833.1 shikimate kinase AroK -
  IPV47_RS28370 (IPV47_28355) pilQ 6096299..6098443 (-) 2145 WP_031686163.1 type 4a pilus secretin PilQ Machinery gene
  IPV47_RS28375 (IPV47_28360) comL/pilP 6098497..6099021 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  IPV47_RS28380 (IPV47_28365) pilO 6099018..6099641 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  IPV47_RS28385 (IPV47_28370) pilN 6099638..6100234 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  IPV47_RS28390 (IPV47_28375) pilM 6100234..6101298 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  IPV47_RS28395 (IPV47_28380) - 6101483..6103954 (+) 2472 WP_031686164.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=438458 IPV47_RS28385 WP_003095839.1 6099638..6100234(-) (pilN) [Pseudomonas aeruginosa strain ST1076_d100blood2]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=438458 IPV47_RS28385 WP_003095839.1 6099638..6100234(-) (pilN) [Pseudomonas aeruginosa strain ST1076_d100blood2]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTCGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGATTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGATGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369