Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   HC660_RS02145 Genome accession   NZ_CP051464
Coordinates   427251..428399 (+) Length   382 a.a.
NCBI ID   WP_168746930.1    Uniprot ID   -
Organism   Bacillus mojavensis strain UCMB5075     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 422251..433399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS02125 (HC660_04150) - 422625..423305 (-) 681 WP_168746927.1 ABC transporter ATP-binding protein -
  HC660_RS02130 (HC660_04160) - 423321..424775 (-) 1455 WP_168746928.1 ABC transporter permease -
  HC660_RS02135 (HC660_04170) yclJ 424988..425671 (+) 684 WP_010333020.1 two-component system response regulator YclJ -
  HC660_RS02140 (HC660_04180) - 425658..427073 (+) 1416 WP_168746929.1 HAMP domain-containing sensor histidine kinase -
  HC660_RS02145 (HC660_04190) rapC 427251..428399 (+) 1149 WP_168746930.1 response regulator aspartate phosphatase RapC Regulator
  HC660_RS02150 (HC660_04200) phrC 428383..428505 (+) 123 WP_010333023.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  HC660_RS02155 - 428610..428702 (-) 93 WP_026014660.1 YjcZ family sporulation protein -
  HC660_RS02160 - 428788..428877 (-) 90 Protein_388 sporulation protein YjcZ -
  HC660_RS02165 (HC660_04210) - 428997..430361 (-) 1365 WP_168746931.1 aspartate kinase -
  HC660_RS02170 (HC660_04220) ceuB 430747..431697 (+) 951 WP_010333025.1 petrobactin ABC transporter permease YclN Machinery gene
  HC660_RS02175 (HC660_04230) yclO 431690..432637 (+) 948 WP_024120217.1 petrobactin ABC transporter permease YclO -
  HC660_RS02180 (HC660_04240) yclP 432631..433389 (+) 759 WP_168746932.1 petrobactin ABC transporter ATP-binding protein YclP -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45690.71 Da        Isoelectric Point: 5.1409

>NTDB_id=438455 HC660_RS02145 WP_168746930.1 427251..428399(+) (rapC) [Bacillus mojavensis strain UCMB5075]
MKSGVIPSSAVGQKINEWYKYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVSDHIERAEFYFKIAEAYYYMKQTYF
SLIHIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALEMAEAEQRAQLVGRAFYNLGLCYYNQDLLD
PAIDHFEKAVSTFENSRITNSLPQAYFLITLIYYKRGKHEKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQAQPNTEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFELSASYFLRVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=438455 HC660_RS02145 WP_168746930.1 427251..428399(+) (rapC) [Bacillus mojavensis strain UCMB5075]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAAATATATCCGGACCTTCAGTGT
ACCGGATGCCGAGGTGCTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGACTCCAACTTGCTGTTATATT
ACTCACTAATGGAATTTCGCCACCAGCTTATGCTTGATTATCTCGAGCCGCTGGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCACGAAATATAGACAGCAACCAAGCTGACCTAAAAGGGCTTCTTGATTACTATGTGAATTTCTT
CCGCGGAATGTATGAGTTTGATAAGCGGGAATTTATTTCTGCCATTACATATTACAAACAGGCGGAGAAAAAACTTTCTT
TTGTTTCCGATCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTACTTT
TCATTGATTCATATCAAGAATGCATATGAAATTTATGTAGAGCAGGAAACCTATAATGTTCGGATTATCCAATGCCATTT
CGTGTTCGGGGTTAACCTCATGGATGAGAGAAATTTCGAACAAGCCGCACGGCATTTTAAATTGGCGCTGGAGATGGCGG
AAGCGGAACAAAGAGCCCAATTGGTTGGAAGAGCATTTTATAATTTGGGGCTGTGTTATTACAATCAAGACCTTCTCGAC
CCTGCCATTGACCATTTTGAGAAAGCAGTTTCTACTTTTGAAAACAGCAGAATCACCAATTCTCTGCCTCAGGCATATTT
TTTAATAACACTTATTTATTATAAACGCGGAAAACATGAGAAGGCTTCGGAATATCACAAGAGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGATTACGCGGTAAAATTTGAGTTTTTACAATCCCTATATCAGGCACAGCCCAACACAGAAGGA
ATCGAACGATGTTTTCAATACTTAAAAAATAAAAATATGTATGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAAAAATGGTTTGAACTGTCTGCTTCCTACTTTCTTAGAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(224-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

95.55

100

0.956
  rapF Bacillus subtilis subsp. subtilis str. 168

56.579

99.476

0.563