Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   IM723_RS03920 Genome accession   NZ_CP063275
Coordinates   740614..741261 (-) Length   215 a.a.
NCBI ID   WP_022096799.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain DMST-H2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 735614..746261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM723_RS03905 holA 737364..738398 (+) 1035 WP_211837002.1 DNA polymerase III subunit delta -
  IM723_RS03910 sodA 738493..739098 (+) 606 WP_011680996.1 superoxide dismutase SodA -
  IM723_RS03915 - 739195..740574 (+) 1380 WP_211837003.1 serine hydrolase -
  IM723_RS03920 cclA/cilC 740614..741261 (-) 648 WP_022096799.1 A24 family peptidase Machinery gene
  IM723_RS03925 - 741370..741891 (+) 522 WP_065973087.1 Dps family protein -
  IM723_RS03930 - 741980..742417 (+) 438 WP_211837004.1 Fur family transcriptional regulator -
  IM723_RS03935 - 742528..742734 (+) 207 WP_002950395.1 YqgQ family protein -
  IM723_RS03940 - 742727..743695 (+) 969 WP_211837005.1 ROK family glucokinase -
  IM723_RS03945 typA 743833..745683 (+) 1851 WP_065973090.1 translational GTPase TypA -
  IM723_RS03950 - 745703..745975 (+) 273 WP_065973091.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24867.95 Da        Isoelectric Point: 8.2133

>NTDB_id=437739 IM723_RS03920 WP_022096799.1 740614..741261(-) (cclA/cilC) [Streptococcus thermophilus strain DMST-H2]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLHFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYDYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFMSVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=437739 IM723_RS03920 WP_022096799.1 740614..741261(-) (cclA/cilC) [Streptococcus thermophilus strain DMST-H2]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
ATCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACATTTTTTCGAAATGATTCCGATTCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTACCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATGACTACCTAGATTTTGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATGAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae TIGR4

39.252

99.535

0.391
  cclA/cilC Streptococcus mitis NCTC 12261

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae Rx1

38.318

99.535

0.381
  cclA/cilC Streptococcus pneumoniae D39

38.318

99.535

0.381
  cclA/cilC Streptococcus pneumoniae R6

38.318

99.535

0.381