Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PSF113_RS55935 Genome accession   NC_016830
Coordinates   5828409..5829755 (+) Length   448 a.a.
NCBI ID   WP_014340267.1    Uniprot ID   -
Organism   Pseudomonas ogarae     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5823409..5834755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSF113_RS55910 (PSF113_5023) pgeF 5823624..5824349 (-) 726 WP_014340262.1 peptidoglycan editing factor PgeF -
  PSF113_RS55915 (PSF113_5024) rluD 5824346..5825308 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSF113_RS55920 (PSF113_5025) - 5825459..5826475 (+) 1017 WP_014340264.1 outer membrane protein assembly factor BamD -
  PSF113_RS55925 (PSF113_5026) - 5826600..5826833 (+) 234 WP_014340265.1 PP0621 family protein -
  PSF113_RS55930 (PSF113_5027) pilS 5826823..5828412 (+) 1590 WP_014340266.1 PAS domain-containing sensor histidine kinase Regulator
  PSF113_RS55935 (PSF113_5028) pilR 5828409..5829755 (+) 1347 WP_014340267.1 sigma-54 dependent transcriptional regulator Regulator
  PSF113_RS55940 (PSF113_5029) - 5829837..5830202 (-) 366 WP_014340268.1 DUF6124 family protein -
  PSF113_RS62810 - 5830964..5831104 (-) 141 WP_158309792.1 hypothetical protein -
  PSF113_RS55955 (PSF113_5030) thiO 5831308..5832408 (-) 1101 WP_014340269.1 glycine oxidase ThiO -
  PSF113_RS55960 (PSF113_5031) - 5832464..5832862 (-) 399 WP_014340270.1 type IV pilin protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50283.66 Da        Isoelectric Point: 5.9902

>NTDB_id=43754 PSF113_RS55935 WP_014340267.1 5828409..5829755(+) (pilR) [Pseudomonas ogarae]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGEAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFVTKPVDLGRLRELVTSALRLPPVATPGTTLERRLLGNSPPMLSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRANQRFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAANTDSPPARLHPQALDALRNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSTTEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=43754 PSF113_RS55935 WP_014340267.1 5828409..5829755(+) (pilR) [Pseudomonas ogarae]
TTGAATAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAGCCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCCGGGGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAACACATCCAGCAACGCTACCCCCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCGTGACCAA
ACCAGTCGACCTGGGCCGGCTGCGGGAGCTGGTCACCAGTGCCCTGCGCCTGCCGCCGGTCGCCACGCCGGGCACCACCC
TCGAGCGCCGCCTGCTGGGCAACTCGCCACCGATGCTCAGCGTGCGCAAGCAGATCGAAAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGGGAATCGGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGCCCCCGTGCCAA
CCAGCGCTTTGTACCGGTCAACTGTGGGGCGATTCCCACGGAGCTGATGGAAAGTGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAGGACAAGCCGGGGCTGTTCCAGGCCGCCCATGGCGGGACCTTGTTCCTCGATGAAGTGGCC
GACCTGCCCCTGGCGATGCAGGTCAAGCTGCTGCGAGCCATCCAGGAAAAAGCCGTGCGCGCCGTGGGCGGCCAGCAAGA
AGAAGTGGTGGATGTGCGAATTCTCTGCGCCACCCACAAGGACCTGGACGCCGAAGTCGCCGCCGGACGCTTTCGCCAGG
ATTTGTATTACCGGCTGAACGTCATCGAACTGCGCGTGCCGCCGTTGCGTGAACGTCGTGAAGACATCGAGCTGCTGGCC
AACCACATGCTCCAGCGCCTGGCGGCCAACACCGACAGTCCACCGGCCAGGTTGCACCCCCAGGCGTTGGACGCTCTCAG
GAATTACCGCTTCCCGGGCAATGTGCGGGAACTGGAGAACATGCTTGAACGGGCCTACACCCTTTGCGAACAGCAGCAGA
TCGAAGCGGATGACCTGCGCTTGGCCGAGGGAAATAGTACTACTGAGGCAGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTCGAGCGCAAGCTCATCCTCCAGGCGTTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGCTAGGGCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.829

99.107

0.781
  pilR Acinetobacter baumannii strain A118

50.545

100

0.518

Multiple sequence alignment