Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSF113_RS55930 Genome accession   NC_016830
Coordinates   5826823..5828412 (+) Length   529 a.a.
NCBI ID   WP_014340266.1    Uniprot ID   -
Organism   Pseudomonas ogarae     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5821823..5833412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSF113_RS55910 (PSF113_5023) pgeF 5823624..5824349 (-) 726 WP_014340262.1 peptidoglycan editing factor PgeF -
  PSF113_RS55915 (PSF113_5024) rluD 5824346..5825308 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSF113_RS55920 (PSF113_5025) - 5825459..5826475 (+) 1017 WP_014340264.1 outer membrane protein assembly factor BamD -
  PSF113_RS55925 (PSF113_5026) - 5826600..5826833 (+) 234 WP_014340265.1 PP0621 family protein -
  PSF113_RS55930 (PSF113_5027) pilS 5826823..5828412 (+) 1590 WP_014340266.1 PAS domain-containing sensor histidine kinase Regulator
  PSF113_RS55935 (PSF113_5028) pilR 5828409..5829755 (+) 1347 WP_014340267.1 sigma-54 dependent transcriptional regulator Regulator
  PSF113_RS55940 (PSF113_5029) - 5829837..5830202 (-) 366 WP_014340268.1 DUF6124 family protein -
  PSF113_RS62810 - 5830964..5831104 (-) 141 WP_158309792.1 hypothetical protein -
  PSF113_RS55955 (PSF113_5030) thiO 5831308..5832408 (-) 1101 WP_014340269.1 glycine oxidase ThiO -
  PSF113_RS55960 (PSF113_5031) - 5832464..5832862 (-) 399 WP_014340270.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58870.59 Da        Isoelectric Point: 7.1770

>NTDB_id=43753 PSF113_RS55930 WP_014340266.1 5826823..5828412(+) (pilS) [Pseudomonas ogarae]
MSAEASSPREKQAQRLLRLYHLYRLSIGITLVLLISSKLDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFAAGGVPSAIGNLLIVSVAIGNTLLRGRIGLLIAAVATLGIVGSSFFLGLSDANRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVIGLEALNALILQRMRTGILVLDRERRVQLANESALNLLGMHDLVGQQLD
DYSTSLVERLQLWRNNPSLRPSSLTVTGTGLTLQPSFIALGHQDQQQILVFLEDLAQVAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRTWLDQFVRQARESMAEH
QHLHLSIDPGDYITLMDPDQLTQVLDNLLRNAWRHSAMAHEQAEAWLKLFIDPHSQLSTLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=43753 PSF113_RS55930 WP_014340266.1 5826823..5828412(+) (pilS) [Pseudomonas ogarae]
GTGAGCGCTGAGGCCTCAAGCCCACGCGAAAAACAGGCGCAGCGCCTGCTGCGCCTCTATCACCTGTATCGTCTGAGCAT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAAACTGGACAACCGCCTACTGGAGTTCGCCAATGACGACCTCCTGCGCA
GTGGCAGTTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTTGAGAACACCCGCCGCCCTGCCCGGCTGTTC
GGCCTGGCCCTGACTGACGTGCTGCTGCTCTCGTGGCTGTTCTTCGCCGCGGGTGGTGTGCCCAGTGCCATCGGCAACCT
GCTCATTGTCTCGGTGGCCATCGGCAATACACTGTTGCGCGGCCGCATCGGCCTGTTGATCGCGGCCGTCGCCACCCTCG
GCATCGTCGGCTCGAGTTTCTTCCTCGGCTTGAGCGATGCGAACCGTCCCAGCAGTTATTTGCAGGCCGGCACCCTGGGG
GCACTGTGTTTTGCCGCCGCCCTGCTGGTACAGGGGCTGACCCGGCGACTGGAAGCCAGCGAAACCCTGGCCGAGCAGCG
CGCCAGCGAAGTGATCGGCCTCGAAGCGCTCAACGCACTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTTGACC
GTGAGCGTCGGGTGCAATTGGCCAACGAAAGCGCGCTGAACCTGCTGGGCATGCACGATCTGGTGGGCCAGCAGCTCGAC
GATTACTCCACCTCACTGGTCGAACGCCTGCAATTGTGGCGAAACAACCCCAGCCTGCGCCCATCCAGCCTGACCGTTAC
CGGCACGGGCCTGACCCTGCAACCGAGCTTCATCGCCTTGGGGCATCAAGATCAGCAGCAGATCCTGGTGTTCCTTGAAG
ACCTGGCCCAGGTCGCCCAGCAGGCCCAGCAGTTGAAACTCGCTTCCCTCGGGCGCCTCACTGCTGGCATCGCCCATGAA
ATCCGCAACCCCTTGGGCGCCATCAGCCACGCGGCGCAATTACTGCGCGAATCCGAGGAACTGAACGACGCGGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAACGAATGAACCGCGTCATTGAAAACGTCCTGCAGCTGTCTCGCCGCCAGC
AAACCACACCCCAACGCCTCGACCTGCGGACCTGGCTCGACCAGTTCGTCCGCCAGGCCCGCGAAAGCATGGCCGAGCAC
CAGCACTTGCACCTGAGCATCGACCCAGGGGACTACATCACGCTGATGGACCCCGACCAGTTGACCCAGGTACTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGCGCCATGGCCCACGAACAGGCCGAGGCCTGGCTGAAACTGTTCATCGACCCCC
ACAGCCAACTGTCCACGCTGGACATCATCGACAACGGCCCCGGTGTCACGCCCGAGCAGCAGGCGCATTTGTTCGAACCT
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.985

99.811

0.609

Multiple sequence alignment