Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SSON53G_RS24455 | Genome accession | NC_016822 |
| Coordinates | 4654059..4654595 (+) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A9P2PPK2 |
| Organism | Shigella sonnei 53G | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 4627637..4659553 | 4654059..4654595 | within | 0 |
Gene organization within MGE regions
Location: 4627637..4659553
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSON53G_RS24330 (SSON53_24380) | - | 4627637..4628220 (+) | 584 | Protein_4595 | SopA family protein | - |
| SSON53G_RS24335 (SSON53_24385) | - | 4628495..4629514 (-) | 1020 | WP_000878026.1 | IS110-like element ISEc11 family transposase | - |
| SSON53G_RS24340 (SSON53_24390) | - | 4629660..4630463 (+) | 804 | Protein_4597 | SopA family protein | - |
| SSON53G_RS24345 (SSON53_24395) | - | 4630730..4631857 (-) | 1128 | WP_001063800.1 | IS110-like element ISSso6 family transposase | - |
| SSON53G_RS30745 | - | 4631984..4632178 (+) | 195 | Protein_4599 | hypothetical protein | - |
| SSON53G_RS24350 (SSON53_24400) | ubiC | 4632401..4632898 (+) | 498 | WP_005140732.1 | chorismate lyase | - |
| SSON53G_RS24355 (SSON53_24405) | ubiA | 4632911..4633783 (+) | 873 | WP_000455227.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| SSON53G_RS24360 (SSON53_24410) | plsB | 4633938..4636361 (-) | 2424 | WP_005144184.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| SSON53G_RS24365 (SSON53_24415) | dgkA | 4636532..4636900 (+) | 369 | WP_000002907.1 | diacylglycerol kinase | - |
| SSON53G_RS24370 (SSON53_24420) | lexA | 4637010..4637618 (+) | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
| SSON53G_RS24375 (SSON53_24425) | dinF | 4637691..4639016 (+) | 1326 | WP_005144191.1 | MATE family efflux transporter DinF | - |
| SSON53G_RS24380 (SSON53_24430) | - | 4639132..4639341 (+) | 210 | WP_001030593.1 | CsbD family protein | - |
| SSON53G_RS24385 (SSON53_24435) | zur | 4639383..4639898 (-) | 516 | WP_001295691.1 | zinc uptake transcriptional repressor Zur | - |
| SSON53G_RS34955 | yjbL | 4640216..4640470 (+) | 255 | WP_000912571.1 | protein YjbL | - |
| SSON53G_RS24395 (SSON53_24445) | - | 4640494..4641201 (+) | 708 | WP_001342660.1 | DUF2713 family protein | - |
| SSON53G_RS24400 (SSON53_24450) | dusA | 4641564..4642601 (+) | 1038 | WP_001298868.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| SSON53G_RS24405 (SSON53_24455) | pspG | 4642735..4642977 (+) | 243 | WP_000891404.1 | envelope stress response protein PspG | - |
| SSON53G_RS24410 (SSON53_24460) | - | 4643143..4644126 (-) | 984 | WP_000235516.1 | quinone oxidoreductase | - |
| SSON53G_RS24415 (SSON53_24465) | dnaB | 4644209..4645624 (+) | 1416 | WP_000918363.1 | replicative DNA helicase | - |
| SSON53G_RS24420 (SSON53_24470) | alr | 4645677..4646756 (+) | 1080 | WP_001147324.1 | alanine racemase | - |
| SSON53G_RS24425 (SSON53_24475) | tyrB | 4647009..4648202 (+) | 1194 | WP_000486974.1 | aromatic amino acid transaminase | - |
| SSON53G_RS34735 | - | 4648706..4648946 (-) | 241 | Protein_4616 | hypothetical protein | - |
| SSON53G_RS24435 (SSON53_24485) | aphA | 4649348..4650061 (+) | 714 | WP_014334096.1 | acid phosphatase AphA | - |
| SSON53G_RS24440 (SSON53_24490) | - | 4650172..4650588 (+) | 417 | WP_000270372.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| SSON53G_RS24445 (SSON53_24495) | - | 4650592..4650948 (+) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| SSON53G_RS24450 (SSON53_24500) | uvrA | 4650983..4653805 (-) | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | - |
| SSON53G_RS24455 (SSON53_24505) | ssb | 4654059..4654595 (+) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| SSON53G_RS24460 | - | 4654694..4654974 (-) | 281 | Protein_4622 | YjcB family protein | - |
| SSON53G_RS24465 (SSON53_24520) | pdeC | 4655404..4656990 (+) | 1587 | WP_000019531.1 | c-di-GMP phosphodiesterase PdeC | - |
| SSON53G_RS24470 (SSON53_24525) | soxS | 4656993..4657316 (-) | 324 | WP_000019358.1 | superoxide response transcriptional regulator SoxS | - |
| SSON53G_RS24475 (SSON53_24535) | - | 4657498..4658195 (+) | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| SSON53G_RS24480 | - | 4658262..4659553 (+) | 1292 | Protein_4626 | pentapeptide repeat-containing protein | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=43731 SSON53G_RS24455 WP_000168305.1 4654059..4654595(+) (ssb) [Shigella sonnei 53G]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=43731 SSON53G_RS24455 WP_000168305.1 4654059..4654595(+) (ssb) [Shigella sonnei 53G]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |