Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HGI45_RS00215 | Genome accession | NZ_CP051292 |
| Coordinates | 39349..40479 (+) | Length | 376 a.a. |
| NCBI ID | WP_202137133.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain ASHA-003 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 34349..45479
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGI45_RS00180 (HGI45_00180) | panD | 34776..35129 (+) | 354 | WP_000142278.1 | aspartate 1-decarboxylase | - |
| HGI45_RS00185 (HGI45_00185) | - | 35132..35434 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HGI45_RS00190 (HGI45_00190) | - | 35434..36438 (+) | 1005 | WP_202137129.1 | PDZ domain-containing protein | - |
| HGI45_RS00195 (HGI45_00195) | comB6 | 36446..37501 (+) | 1056 | WP_202137130.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HGI45_RS00200 (HGI45_00200) | comB7 | 37517..37630 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HGI45_RS00205 (HGI45_00205) | comB8 | 37627..38370 (+) | 744 | WP_202137131.1 | virB8 family protein | Machinery gene |
| HGI45_RS00210 (HGI45_00210) | comB9 | 38370..39356 (+) | 987 | WP_202137132.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HGI45_RS00215 (HGI45_00215) | comB10 | 39349..40479 (+) | 1131 | WP_202137133.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HGI45_RS00220 (HGI45_00220) | - | 40549..41961 (+) | 1413 | WP_202137134.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HGI45_RS00225 (HGI45_00225) | gmd | 42003..43148 (+) | 1146 | WP_202137135.1 | GDP-mannose 4,6-dehydratase | - |
| HGI45_RS00230 (HGI45_00230) | - | 43141..44073 (+) | 933 | WP_021172695.1 | GDP-L-fucose synthase | - |
| HGI45_RS00235 (HGI45_00235) | - | 44098..44232 (-) | 135 | WP_202137595.1 | anthranilate synthase component I | - |
| HGI45_RS00240 (HGI45_00240) | - | 44423..44728 (-) | 306 | WP_202137551.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41972.49 Da Isoelectric Point: 9.8332
>NTDB_id=437261 HGI45_RS00215 WP_202137133.1 39349..40479(+) (comB10) [Helicobacter pylori strain ASHA-003]
MNKWLKGAVVFVGGFATIITISLVYHQKPKALLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMNPKTTPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPMDNPNGIDSFTNLKEKD
TATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAVVFVGGFATIITISLVYHQKPKALLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMNPKTTPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPMDNPNGIDSFTNLKEKD
TATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1131 bp
>NTDB_id=437261 HGI45_RS00215 WP_202137133.1 39349..40479(+) (comB10) [Helicobacter pylori strain ASHA-003]
ATGAATAAGTGGCTTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTATAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCTCTTAAATAACCAACCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCCACCATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTACTAGCCCTCCCATGAATCCAAAAAC
AACCCCCCCTAAAAAAGACTTTTCTCCAAAACAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATAGTTTCACTAACCTTAAAGAAAAAGAC
ACCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAAGCCGTCTTAATCCCTA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGCCGCATC
ATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTAGTGATTAG
AGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
ATGAATAAGTGGCTTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTATAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCTCTTAAATAACCAACCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCCACCATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTACTAGCCCTCCCATGAATCCAAAAAC
AACCCCCCCTAAAAAAGACTTTTCTCCAAAACAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATAGTTTCACTAACCTTAAAGAAAAAGAC
ACCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAAGCCGTCTTAATCCCTA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGCCGCATC
ATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTAGTGATTAG
AGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.213 |
100 |
0.952 |