Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HGI45_RS00205 Genome accession   NZ_CP051292
Coordinates   37627..38370 (+) Length   247 a.a.
NCBI ID   WP_202137131.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-003     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32627..43370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGI45_RS00180 (HGI45_00180) panD 34776..35129 (+) 354 WP_000142278.1 aspartate 1-decarboxylase -
  HGI45_RS00185 (HGI45_00185) - 35132..35434 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  HGI45_RS00190 (HGI45_00190) - 35434..36438 (+) 1005 WP_202137129.1 PDZ domain-containing protein -
  HGI45_RS00195 (HGI45_00195) comB6 36446..37501 (+) 1056 WP_202137130.1 P-type conjugative transfer protein TrbL Machinery gene
  HGI45_RS00200 (HGI45_00200) comB7 37517..37630 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HGI45_RS00205 (HGI45_00205) comB8 37627..38370 (+) 744 WP_202137131.1 virB8 family protein Machinery gene
  HGI45_RS00210 (HGI45_00210) comB9 38370..39356 (+) 987 WP_202137132.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HGI45_RS00215 (HGI45_00215) comB10 39349..40479 (+) 1131 WP_202137133.1 DNA type IV secretion system protein ComB10 Machinery gene
  HGI45_RS00220 (HGI45_00220) - 40549..41961 (+) 1413 WP_202137134.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HGI45_RS00225 (HGI45_00225) gmd 42003..43148 (+) 1146 WP_202137135.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28722.95 Da        Isoelectric Point: 8.9604

>NTDB_id=437259 HGI45_RS00205 WP_202137131.1 37627..38370(+) (comB8) [Helicobacter pylori strain ASHA-003]
MREKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISLLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=437259 HGI45_RS00205 WP_202137131.1 37627..38370(+) (comB8) [Helicobacter pylori strain ASHA-003]
ATGAGAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGATTGGAGAGGAATCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTCTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCTATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAGGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATCTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCGGCTAAACTTTTGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGTTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

98.785

100

0.988