Detailed information NTG0437257

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HGI45_RS00195
• Genome accession: NZ_CP051292
• Coordinates: 36446..37501 (+)
• Length: 351 a.a.
• NCBI ID: WP_202137130.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ASHA-003
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31446..42501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HGI45_RS00165 (HGI45_00165)	-	31868..32281 (+)	414	WP_001023005.1	universal stress protein	-
HGI45_RS00170 (HGI45_00170)	-	32283..32558 (+)	276	WP_000781794.1	ATP-dependent Clp protease adaptor ClpS	-
HGI45_RS00175 (HGI45_00175)	-	32558..34786 (+)	2229	WP_202137128.1	ATP-dependent Clp protease ATP-binding subunit	-
HGI45_RS00180 (HGI45_00180)	panD	34776..35129 (+)	354	WP_000142278.1	aspartate 1-decarboxylase	-
HGI45_RS00185 (HGI45_00185)	-	35132..35434 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HGI45_RS00190 (HGI45_00190)	-	35434..36438 (+)	1005	WP_202137129.1	PDZ domain-containing protein	-
HGI45_RS00195 (HGI45_00195)	comB6	36446..37501 (+)	1056	WP_202137130.1	P-type conjugative transfer protein TrbL	Machinery gene
HGI45_RS00200 (HGI45_00200)	comB7	37517..37630 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HGI45_RS00205 (HGI45_00205)	comB8	37627..38370 (+)	744	WP_202137131.1	virB8 family protein	Machinery gene
HGI45_RS00210 (HGI45_00210)	comB9	38370..39356 (+)	987	WP_202137132.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HGI45_RS00215 (HGI45_00215)	comB10	39349..40479 (+)	1131	WP_202137133.1	DNA type IV secretion system protein ComB10	Machinery gene
HGI45_RS00220 (HGI45_00220)	-	40549..41961 (+)	1413	WP_202137134.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39619.51 Da
• Isoelectric Point: 9.0406

>NTDB_id=437257 HGI45_RS00195 WP_202137130.1 36446..37501(+) (comB6) [Helicobacter pylori strain ASHA-003]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQSVFNSAVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIVPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVIICLKKCFALGFYKPFLLLVGFLNVSVTKALIDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTLSAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=437257 HGI45_RS00195 WP_202137130.1 36446..37501(+) (comB6) [Helicobacter pylori strain ASHA-003]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATCGGTGTTTAATAGTGCGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAGCAGAATTTTTTCAGCGCTAGCGCGCTTTTAGAGGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGTGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTAAGCGTGCTG
TTTGCAATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTAATTATATGCCTTAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCGTTAATAGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATCGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTCAATTCTTTACAATATATCA
CGACTTTATCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	94.587	100	0.946