Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HEP75_RS07095 Genome accession   NZ_CP051261
Coordinates   1677477..1678007 (+) Length   176 a.a.
NCBI ID   WP_185815777.1    Uniprot ID   -
Organism   Xanthomonas sp. SI     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1672477..1683007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP75_RS07080 (HEP75_01388) murD 1673655..1675079 (+) 1425 WP_185825932.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  HEP75_RS07085 (HEP75_01389) - 1675294..1676088 (+) 795 WP_185825933.1 dienelactone hydrolase family protein -
  HEP75_RS07090 (HEP75_01390) - 1676286..1677284 (-) 999 WP_185825934.1 polyprenyl synthetase family protein -
  HEP75_RS07095 (HEP75_01391) ssb 1677477..1678007 (+) 531 WP_185815777.1 single-stranded DNA-binding protein Machinery gene
  HEP75_RS07100 (HEP75_01392) - 1678112..1678387 (+) 276 WP_185825935.1 hypothetical protein -
  HEP75_RS07105 (HEP75_01393) - 1679198..1680295 (-) 1098 WP_185825936.1 cytochrome c peroxidase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18856.77 Da        Isoelectric Point: 5.3242

>NTDB_id=437137 HEP75_RS07095 WP_185815777.1 1677477..1678007(+) (ssb) [Xanthomonas sp. SI]
MARGINKVILVGNLGNDPDTKYTQAGMAITRISLATTSVRKDKDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGVEKYSTDIVADEMQMLGGREGGGGGGAGMGGDRPQRAAAPRQERPNQGGGGQGGGGQDYAPRRQQPAP
QQSAPMDDFADDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=437137 HEP75_RS07095 WP_185815777.1 1677477..1678007(+) (ssb) [Xanthomonas sp. SI]
ATGGCCCGCGGCATCAATAAAGTCATCCTCGTCGGCAACCTCGGCAACGACCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCATCAGCCTGGCCACCACCAGCGTGCGCAAGGACAAGGACGGCAACCAGCAGGAGCGCACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTATTCCACCGACATCGTCGCCGACGAGATGCAGAT
GCTGGGCGGTCGCGAAGGCGGCGGCGGTGGTGGTGCCGGCATGGGCGGCGATCGCCCGCAGCGTGCGGCCGCACCGCGCC
AGGAACGCCCGAACCAGGGCGGCGGCGGGCAGGGCGGCGGTGGCCAGGACTACGCGCCGCGCCGCCAGCAGCCGGCGCCG
CAGCAGTCCGCGCCGATGGACGATTTCGCGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.739

100

0.489
  ssb Vibrio cholerae strain A1552

44.503

100

0.483
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.472
  ssb Neisseria meningitidis MC58

45.506

100

0.46