Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HF553_RS22060 Genome accession   NZ_CP051218
Coordinates   4576339..4576869 (-) Length   176 a.a.
NCBI ID   WP_000168322.1    Uniprot ID   -
Organism   Salmonella sp. SCFS4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4571339..4581869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF553_RS22045 (HF553_22070) siiC 4571960..4573279 (-) 1320 WP_001541306.1 SPI-4 type I secretion system protein SiiC -
  HF553_RS22050 (HF553_22075) - 4573269..4574657 (-) 1389 WP_023227582.1 MotA/TolQ/ExbB proton channel family protein -
  HF553_RS22055 (HF553_22080) siiA 4574654..4575286 (-) 633 WP_023227583.1 SPI-4 type I secretion system auxiliary protein SiiA -
  HF553_RS22060 (HF553_22085) ssb 4576339..4576869 (-) 531 WP_000168322.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HF553_RS22065 (HF553_22090) uvrA 4577117..4579942 (+) 2826 WP_000357724.1 excinuclease ABC subunit UvrA -
  HF553_RS22070 (HF553_22095) - 4580074..4580529 (+) 456 WP_001609612.1 hypothetical protein -
  HF553_RS22075 (HF553_22100) - 4580516..4580854 (+) 339 WP_000146600.1 hypothetical protein -
  HF553_RS22080 (HF553_22105) - 4580855..4581211 (-) 357 WP_023227584.1 MmcQ/YjbR family DNA-binding protein -
  HF553_RS22085 (HF553_22110) - 4581214..4581630 (-) 417 WP_000270392.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19074.15 Da        Isoelectric Point: 5.2456

>NTDB_id=437023 HF553_RS22060 WP_000168322.1 4576339..4576869(-) (ssb) [Salmonella sp. SCFS4]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=437023 HF553_RS22060 WP_000168322.1 4576339..4576869(-) (ssb) [Salmonella sp. SCFS4]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGGGTGGTGATGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAATTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTGATGCAGATGCTGGGTGGTCGCCAGGGCGGCGGCGCACCGGCAGGCGGTCAGCAGCAGGGGGGTTGGGGTC
AGCCGCAACAACCTCAGCAGCCGCAGGGCGGTAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.978

100

0.744
  ssb Glaesserella parasuis strain SC1401

60.109

100

0.625
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.483
  ssb Neisseria meningitidis MC58

46.409

100

0.477