Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HGD77_RS01240 Genome accession   NZ_CP051208
Coordinates   272078..272665 (+) Length   195 a.a.
NCBI ID   WP_004281391.1    Uniprot ID   A0A2K8UM26
Organism   Acinetobacter sp. NEB149     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 272078..309347 272078..272665 within 0


Gene organization within MGE regions


Location: 272078..309347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGD77_RS01240 (HGD77_01240) ssb 272078..272665 (+) 588 WP_004281391.1 single-stranded DNA-binding protein Machinery gene
  HGD77_RS01245 (HGD77_01245) - 272810..274177 (+) 1368 WP_168730612.1 tyrosine-type recombinase/integrase -
  HGD77_RS01250 (HGD77_01250) - 274177..275730 (+) 1554 WP_228761452.1 site-specific integrase -
  HGD77_RS01255 (HGD77_01255) - 275727..277886 (+) 2160 WP_228761453.1 hypothetical protein -
  HGD77_RS01260 (HGD77_01260) - 277883..278299 (+) 417 WP_168730613.1 hypothetical protein -
  HGD77_RS01265 (HGD77_01265) yhhA 278512..278670 (+) 159 WP_168730614.1 YhhA family cyclophane-containing RiPP -
  HGD77_RS01270 (HGD77_01270) yhhB 278673..279797 (+) 1125 WP_168730615.1 cyclophane-forming radical SAM/SPASM peptide maturase YhhB -
  HGD77_RS01275 (HGD77_01275) yhhC 279794..280378 (+) 585 WP_168730616.1 cyclophane-containing peptide 2OG-Fe(II) oxygenase YhhC -
  HGD77_RS01280 (HGD77_01280) - 280384..281130 (+) 747 WP_168730617.1 aKG-HExxH-type peptide beta-hydroxylase -
  HGD77_RS01285 (HGD77_01285) - 281146..281607 (-) 462 WP_228761454.1 hypothetical protein -
  HGD77_RS01290 (HGD77_01290) - 281725..281931 (+) 207 WP_168730618.1 helix-turn-helix domain-containing protein -
  HGD77_RS01295 (HGD77_01295) - 281976..282656 (+) 681 WP_168730619.1 hypothetical protein -
  HGD77_RS01300 (HGD77_01300) - 282653..283480 (+) 828 WP_168730620.1 ImmA/IrrE family metallo-endopeptidase -
  HGD77_RS01305 (HGD77_01305) - 283470..284579 (+) 1110 WP_168730621.1 beta family protein -
  HGD77_RS01310 (HGD77_01310) - 284559..285116 (-) 558 WP_168730622.1 sce7726 family protein -
  HGD77_RS01315 (HGD77_01315) ahpC 285644..286207 (+) 564 WP_004278673.1 alkyl hydroperoxide reductase subunit C -
  HGD77_RS01320 (HGD77_01320) - 286829..288136 (+) 1308 WP_004729213.1 FAD-dependent oxidoreductase -
  HGD77_RS01325 (HGD77_01325) - 288140..288988 (+) 849 WP_004729214.1 SAM-dependent methyltransferase -
  HGD77_RS01335 (HGD77_01335) - 289345..289572 (-) 228 WP_004729215.1 hypothetical protein -
  HGD77_RS01340 (HGD77_01340) - 290095..291062 (+) 968 Protein_256 IS30 family transposase -
  HGD77_RS01345 (HGD77_01345) - 291463..292116 (+) 654 WP_410169313.1 hypothetical protein -
  HGD77_RS01350 (HGD77_01350) - 292154..300460 (-) 8307 WP_168730623.1 PLxRFG domain-containing protein -
  HGD77_RS01355 (HGD77_01355) - 301602..304073 (-) 2472 WP_168730624.1 DUF927 domain-containing protein -
  HGD77_RS01360 (HGD77_01360) - 304070..304441 (-) 372 WP_164542868.1 hypothetical protein -
  HGD77_RS16930 - 304755..305516 (-) 762 WP_228747339.1 KilA-N domain-containing protein -
  HGD77_RS01375 (HGD77_01375) - 305519..305806 (-) 288 WP_164542867.1 helix-turn-helix transcriptional regulator -
  HGD77_RS01380 (HGD77_01380) - 305939..306493 (-) 555 WP_168730625.1 hypothetical protein -
  HGD77_RS01385 (HGD77_01385) - 306590..307618 (-) 1029 WP_080591915.1 transposase -
  HGD77_RS01390 (HGD77_01390) - 307672..307959 (-) 288 WP_168730626.1 hypothetical protein -
  HGD77_RS01395 (HGD77_01395) - 308058..309347 (-) 1290 WP_168730627.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21359.06 Da        Isoelectric Point: 6.4820

>NTDB_id=436936 HGD77_RS01240 WP_004281391.1 272078..272665(+) (ssb) [Acinetobacter sp. NEB149]
MRGVNKVILVGTLGKDPETKTFANGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSSRPQNDQGESSFNQPRFNNNNQANNNQGGYGNNPQSGYGSAPQQGGFNNN
QGGGYGNNNPSGFAPKSAPAPTAAPAADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=436936 HGD77_RS01240 WP_004281391.1 272078..272665(+) (ssb) [Acinetobacter sp. NEB149]
ATGCGTGGTGTAAATAAAGTTATTTTAGTGGGTACTTTGGGTAAAGATCCGGAAACCAAAACTTTTGCAAATGGTGGCTC
TCTCACTCAATTCTCGATCGCAACCAGCGATTCGTGGACAGATAAAAGTACCGGTGAACGTAAAGAACAAACGGAATGGC
ACCGTATCGTGTTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTTCGTAAAGGCTCAAAAGTATATATTGAAGGT
TCATTACGTACCCGTCAGTGGACTGACCAGAATGGTCAGGAGCGCTATACGACGGAAATTCGTGGTGAACAAATGCAGAT
GTTAGACTCTAGCCGTCCTCAAAATGATCAGGGCGAGAGCAGCTTTAACCAGCCACGCTTTAATAACAATAATCAGGCGA
ACAACAACCAGGGTGGTTATGGCAATAACCCGCAATCAGGTTATGGTTCAGCGCCACAGCAAGGCGGTTTTAACAACAAT
CAGGGCGGCGGTTATGGCAACAATAACCCGAGTGGTTTTGCGCCGAAATCTGCACCTGCTCCAACAGCAGCGCCTGCAGC
AGATCTAGATGATGACTTACCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8UM26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.759

100

0.528
  ssb Vibrio cholerae strain A1552

41.206

100

0.421
  ssb Neisseria meningitidis MC58

37.5

98.462

0.369
  ssb Neisseria gonorrhoeae MS11

37.5

98.462

0.369