Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   LPV_RS07890 Genome accession   NC_018140
Coordinates   1737377..1738387 (-) Length   336 a.a.
NCBI ID   WP_027268232.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1732377..1743387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPV_RS07860 (LPV_1706) - 1732716..1733549 (-) 834 WP_014843885.1 S1/P1 nuclease -
  LPV_RS07865 (LPV_1707) tolB 1733552..1734811 (-) 1260 WP_014843886.1 Tol-Pal system beta propeller repeat protein TolB -
  LPV_RS07870 (LPV_1708) tolA 1734817..1735815 (-) 999 WP_014843887.1 cell envelope integrity protein TolA -
  LPV_RS07875 (LPV_1709) tolR 1735812..1736267 (-) 456 WP_010947302.1 protein TolR -
  LPV_RS07880 (LPV_1710) tolQ 1736276..1736953 (-) 678 WP_011946571.1 protein TolQ -
  LPV_RS07885 (LPV_1711) ybgC 1736978..1737373 (-) 396 WP_010947304.1 tol-pal system-associated acyl-CoA thioesterase -
  LPV_RS07890 (LPV_1712) ruvB 1737377..1738387 (-) 1011 WP_027268232.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LPV_RS07895 (LPV_1713) - 1738534..1739097 (-) 564 WP_014843889.1 sigma-70 family RNA polymerase sigma factor -
  LPV_RS07900 (LPV_1714) - 1739198..1739641 (-) 444 WP_042235520.1 lpg1578 family Dot/Icm T4SS effector -
  LPV_RS07905 (LPV_1715) - 1739583..1739822 (-) 240 WP_011946576.1 succinate dehydrogenase assembly factor 2 -
  LPV_RS07910 (LPV_1716) - 1739948..1740937 (+) 990 WP_014843891.1 YgfZ/GcvT domain-containing protein -
  LPV_RS07915 (LPV_1717) - 1740968..1741516 (-) 549 WP_014843892.1 cytochrome b -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37103.68 Da        Isoelectric Point: 5.4513

>NTDB_id=43693 LPV_RS07890 WP_027268232.1 1737377..1738387(-) (ruvB) [Legionella pneumophila subsp. pneumophila]
MLESDRLISSQSIVSEDAMDRAIRPLSLNEYVGQDSVSSQMQIFINAAKKRNDPLDHVLIFGPPGLGKTTLANIIAHEMG
VNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGA
TTRAGLLTSPLRDRFGIVQRLEYYSVDSLTKIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNG
IITVDMAQQALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFLMRTPRGRIA
TSKAYQHFGFSAIEQE

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=43693 LPV_RS07890 WP_027268232.1 1737377..1738387(-) (ruvB) [Legionella pneumophila subsp. pneumophila]
ATGCTCGAAAGTGATCGCCTAATAAGTAGTCAAAGTATTGTCTCGGAAGACGCAATGGATAGAGCCATCAGGCCGCTTAG
CTTGAACGAGTACGTAGGGCAAGATTCTGTAAGCTCACAGATGCAGATATTTATCAATGCGGCAAAAAAGAGAAACGATC
CTTTGGATCATGTTCTTATTTTTGGCCCACCTGGCCTTGGTAAAACCACTCTGGCAAATATCATAGCTCACGAAATGGGA
GTGAATATCCGACAAACTTCTGGGCCAGTGATTGAGCGTGCTGGCGATATTGCTGCTATATTGACGAATCTACAACAAAA
TGATGTACTATTTATTGATGAAATTCATAGATTAAGTCCTGTTATAGAAGAAATTCTTTATCCAGCCATGGAAGATTATA
AGTTGGATATCATGATAGGAGAGGGGCCAGCAGCACGATCTATTAAATTGGAGTTACCTCCCTTTACATTAATTGGAGCA
ACGACGAGAGCAGGGTTGCTTACCTCGCCATTAAGGGATAGATTTGGTATAGTGCAGCGTTTGGAATATTATTCTGTTGA
TTCGCTTACCAAGATTGTGGCACGCTCTGCGCATTTGCTTGGTGTCCCTACAAAACCCGAAGGAGCCAGAGAAATTGCAT
TACGCTCCAGAGGAACACCACGAATAGCCAATCGCCTGTTAAGAAGAGTCAGGGATTATTCTGAAGTGAAAGGAAATGGC
ATCATTACTGTTGATATGGCCCAACAAGCATTGGAAATGCTTGAAGTGGATCAGCACGGGTTTGATTTAATGGATAGAAA
ATTATTGTTAGCGGTGATAGAACACTTCAATGGTGGTCCAGTAGGCATAGATAGTATTGCCGCTGCTATTGGCGAAGAAA
AAGGGACTATAGAAGATGTTTTAGAGCCATTTTTAATACAACAAGGCTTTCTAATGCGCACTCCTCGCGGTAGAATAGCC
ACTTCGAAAGCTTATCAGCATTTTGGCTTTAGTGCGATCGAACAGGAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

RuvB AAA lid domain (AAA_lid_4)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.671

97.619

0.592
  ruvB Streptococcus pneumoniae TIGR4

56.97

98.214

0.56
  ruvB Streptococcus pneumoniae R6

56.97

98.214

0.56
  ruvB Streptococcus pneumoniae D39

56.97

98.214

0.56
  ruvB Helicobacter pylori 26695

53.106

95.833

0.509
  ruvB Synechocystis sp. PCC 6803

53.548

92.262

0.494