Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   INP90_RS03500 Genome accession   NZ_CP063124
Coordinates   717101..717943 (+) Length   280 a.a.
NCBI ID   WP_197559946.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C113_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 712101..722943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP90_RS03485 (INP90_03485) psiE 713019..713435 (+) 417 WP_070582952.1 phosphate-starvation-inducible protein PsiE -
  INP90_RS03490 (INP90_03490) - 713471..714316 (-) 846 WP_049373837.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  INP90_RS10370 - 714383..715075 (-) 693 Protein_676 penicillin-binding protein 1A -
  INP90_RS03495 (INP90_03495) - 715151..717001 (-) 1851 Protein_677 penicillin-binding protein 1A -
  INP90_RS03500 (INP90_03500) comA 717101..717943 (+) 843 WP_197559946.1 competence protein ComA Machinery gene
  INP90_RS03505 (INP90_03505) comB 717936..718448 (+) 513 WP_197559947.1 competence protein ComB Machinery gene
  INP90_RS03510 (INP90_03510) comC 718445..718987 (+) 543 WP_197542724.1 competence protein ComC Machinery gene
  INP90_RS03515 (INP90_03515) - 718987..719370 (+) 384 WP_070582959.1 pilus assembly protein PilP -
  INP90_RS03520 (INP90_03520) comE 719372..720754 (+) 1383 WP_197542725.1 type IV pilus secretin PilQ Machinery gene
  INP90_RS03525 (INP90_03525) - 720774..721463 (+) 690 WP_197542726.1 ComF family protein -
  INP90_RS03530 (INP90_03530) nfuA 721579..722163 (+) 585 WP_014064659.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 32413.32 Da        Isoelectric Point: 5.6260

>NTDB_id=436927 INP90_RS03500 WP_197559946.1 717101..717943(+) (comA) [Haemophilus parainfluenzae strain M1C113_1]
MGIVPRKQRKQKIGVSKQQDNLYFVWLDEFYKVQSICLNGQQKDIFPQLLSHLSQKANQCCFIGSISPHLTWSKTLILPQ
TLNAQECEQQCRFILQKELPIPLDELWFDYLSMPLKQGFRLDITAIRQESANAELEKYLPLELTALDLLNHSILRAFYAI
LGQEPINTLFLYQDQQGCLAVCERLQQRQVLQSQGHLSELYQQFTHRFPETIEQIYVYQTPDILNSHTIGLLPQDWQRIE
TDLPFIALGNALWQTDLKLVDLSLKSPALLPSINRESGDV

Nucleotide


Download         Length: 843 bp        

>NTDB_id=436927 INP90_RS03500 WP_197559946.1 717101..717943(+) (comA) [Haemophilus parainfluenzae strain M1C113_1]
ATGGGAATTGTTCCTAGAAAGCAGCGAAAACAAAAAATTGGTGTGAGTAAACAACAAGATAACCTCTATTTTGTTTGGCT
AGATGAATTCTACAAAGTTCAATCTATTTGCTTAAATGGACAGCAAAAGGACATTTTTCCCCAGTTATTATCTCATTTAT
CGCAAAAAGCGAACCAATGTTGTTTTATTGGTTCCATTTCACCCCATTTGACTTGGTCTAAAACGCTTATTTTACCGCAA
ACACTCAATGCTCAGGAGTGTGAACAACAATGTCGTTTCATTTTGCAAAAAGAATTGCCGATTCCGTTGGATGAATTATG
GTTTGATTATCTTTCCATGCCATTAAAACAAGGTTTCCGTTTGGATATCACGGCGATTCGACAAGAAAGCGCCAATGCAG
AATTGGAAAAATATTTGCCGCTAGAATTGACCGCACTTGATTTACTGAATCACAGTATTTTACGTGCATTTTATGCCATT
TTAGGTCAAGAGCCGATTAACACCTTATTTTTATATCAAGATCAACAAGGATGTCTCGCCGTTTGTGAACGCTTACAACA
ACGACAAGTTTTGCAATCTCAAGGTCATTTATCCGAACTTTATCAACAATTTACCCACCGTTTTCCTGAAACCATAGAAC
AGATTTATGTGTATCAAACGCCCGATATATTGAATTCACATACAATCGGATTACTGCCTCAGGATTGGCAGCGTATCGAA
ACCGATCTTCCTTTCATTGCTTTAGGTAATGCACTTTGGCAAACCGATTTAAAGCTAGTAGATTTATCTTTAAAATCACC
CGCACTTTTGCCTTCAATTAACCGGGAGAGTGGTGATGTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

49.81

93.929

0.468
  comA Haemophilus influenzae 86-028NP

49.43

93.929

0.464