Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   INP90_RS03505 Genome accession   NZ_CP063124
Coordinates   717936..718448 (+) Length   170 a.a.
NCBI ID   WP_197559947.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C113_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 712936..723448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP90_RS03485 (INP90_03485) psiE 713019..713435 (+) 417 WP_070582952.1 phosphate-starvation-inducible protein PsiE -
  INP90_RS03490 (INP90_03490) - 713471..714316 (-) 846 WP_049373837.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  INP90_RS10370 - 714383..715075 (-) 693 Protein_676 penicillin-binding protein 1A -
  INP90_RS03495 (INP90_03495) - 715151..717001 (-) 1851 Protein_677 penicillin-binding protein 1A -
  INP90_RS03500 (INP90_03500) comA 717101..717943 (+) 843 WP_197559946.1 competence protein ComA Machinery gene
  INP90_RS03505 (INP90_03505) comB 717936..718448 (+) 513 WP_197559947.1 competence protein ComB Machinery gene
  INP90_RS03510 (INP90_03510) comC 718445..718987 (+) 543 WP_197542724.1 competence protein ComC Machinery gene
  INP90_RS03515 (INP90_03515) - 718987..719370 (+) 384 WP_070582959.1 pilus assembly protein PilP -
  INP90_RS03520 (INP90_03520) comE 719372..720754 (+) 1383 WP_197542725.1 type IV pilus secretin PilQ Machinery gene
  INP90_RS03525 (INP90_03525) - 720774..721463 (+) 690 WP_197542726.1 ComF family protein -
  INP90_RS03530 (INP90_03530) nfuA 721579..722163 (+) 585 WP_014064659.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 20251.27 Da        Isoelectric Point: 6.4911

>NTDB_id=436928 INP90_RS03505 WP_197559947.1 717936..718448(+) (comB) [Haemophilus parainfluenzae strain M1C113_1]
MFSLNLLPWRLEQYQKAFRRFMWQGLIWLACSVLIVVGLNQLNEQQGQTLNQTKEKLTQITHQVHQKRIQIQQLQSSLKE
MNELTEMDTKYVYHLLNLLSELPLKQGELDEFTLNAKQVALSGMTESQQEFEEIHQFLKRHFTEVNLTKFQPVQQQLFFQ
FDIHLSESVQ

Nucleotide


Download         Length: 513 bp        

>NTDB_id=436928 INP90_RS03505 WP_197559947.1 717936..718448(+) (comB) [Haemophilus parainfluenzae strain M1C113_1]
ATGTTTAGCCTTAATTTATTGCCTTGGCGCTTAGAACAATATCAAAAGGCCTTTCGTCGTTTTATGTGGCAAGGTTTAAT
TTGGCTAGCTTGCTCAGTTTTGATCGTTGTTGGATTGAACCAACTCAATGAACAACAAGGGCAAACTCTAAATCAGACAA
AAGAAAAACTGACACAAATCACTCATCAAGTCCATCAGAAACGCATTCAGATTCAGCAACTACAAAGTAGTCTGAAAGAA
ATGAATGAGCTGACAGAAATGGATACGAAATATGTGTATCACCTGCTTAATTTATTAAGTGAGCTACCATTAAAACAGGG
CGAGTTAGATGAATTTACGCTTAATGCTAAGCAAGTTGCCCTTTCAGGCATGACAGAAAGCCAACAAGAGTTTGAGGAGA
TACATCAATTTCTCAAACGCCATTTTACAGAGGTTAACTTAACTAAGTTTCAGCCAGTGCAACAGCAGTTATTTTTTCAA
TTTGATATTCATTTATCGGAGTCTGTGCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

40.994

94.706

0.388
  comB Haemophilus influenzae Rd KW20

40.373

94.706

0.382