Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   INP90_RS03510 Genome accession   NZ_CP063124
Coordinates   718445..718987 (+) Length   180 a.a.
NCBI ID   WP_197542724.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C113_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 713445..723987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP90_RS03490 (INP90_03490) - 713471..714316 (-) 846 WP_049373837.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  INP90_RS10370 - 714383..715075 (-) 693 Protein_676 penicillin-binding protein 1A -
  INP90_RS03495 (INP90_03495) - 715151..717001 (-) 1851 Protein_677 penicillin-binding protein 1A -
  INP90_RS03500 (INP90_03500) comA 717101..717943 (+) 843 WP_197559946.1 competence protein ComA Machinery gene
  INP90_RS03505 (INP90_03505) comB 717936..718448 (+) 513 WP_197559947.1 competence protein ComB Machinery gene
  INP90_RS03510 (INP90_03510) comC 718445..718987 (+) 543 WP_197542724.1 competence protein ComC Machinery gene
  INP90_RS03515 (INP90_03515) - 718987..719370 (+) 384 WP_070582959.1 pilus assembly protein PilP -
  INP90_RS03520 (INP90_03520) comE 719372..720754 (+) 1383 WP_197542725.1 type IV pilus secretin PilQ Machinery gene
  INP90_RS03525 (INP90_03525) - 720774..721463 (+) 690 WP_197542726.1 ComF family protein -
  INP90_RS03530 (INP90_03530) nfuA 721579..722163 (+) 585 WP_014064659.1 Fe-S biogenesis protein NfuA -
  INP90_RS03535 (INP90_03535) comM 722207..723736 (-) 1530 WP_197542727.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 21053.09 Da        Isoelectric Point: 6.3356

>NTDB_id=436929 INP90_RS03510 WP_197542724.1 718445..718987(+) (comC) [Haemophilus parainfluenzae strain M1C113_1]
MRGFINELVQKSAQSWFGRWLRLPQMVHAAFWLSALSAVIFLPVFRYVENSNERHRLDAELSLQQQEWDKQEKILQTLRQ
KSDSRQLSPELANSVLPINQHVQALLNGRLRALDLRWDFSQHTLLHLSLQGYFVDLQQFLTALLNDIPTLSLTQLNIEKL
DEEENASITCELIFQLNKDK

Nucleotide


Download         Length: 543 bp        

>NTDB_id=436929 INP90_RS03510 WP_197542724.1 718445..718987(+) (comC) [Haemophilus parainfluenzae strain M1C113_1]
ATGAGAGGCTTTATCAATGAGCTTGTTCAAAAAAGTGCACAAAGTTGGTTTGGGAGATGGCTTCGATTACCTCAAATGGT
CCATGCTGCCTTTTGGTTGAGTGCATTAAGTGCGGTCATCTTTTTACCTGTTTTTCGTTACGTTGAAAATAGCAACGAAC
GACATCGACTTGACGCAGAATTGAGTTTGCAGCAGCAAGAGTGGGATAAACAGGAAAAGATTTTACAAACCTTAAGGCAA
AAGTCAGACAGTCGGCAACTTTCTCCAGAATTAGCTAATTCAGTGTTGCCGATTAATCAGCATGTACAGGCTTTGTTAAA
TGGGCGACTTCGAGCGTTGGATTTACGTTGGGATTTTTCTCAACATACTTTGTTGCATTTGTCATTGCAAGGCTATTTTG
TCGATTTACAGCAATTTTTAACCGCGCTTTTAAACGATATTCCTACACTTTCTTTAACGCAATTAAACATTGAGAAATTA
GATGAAGAGGAAAATGCTTCTATTACATGTGAGTTAATTTTCCAATTAAATAAGGACAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

40.223

99.444

0.4
  comC Haemophilus influenzae Rd KW20

39.665

99.444

0.394