Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HEP74_RS06885 Genome accession   NZ_CP051190
Coordinates   1643321..1643851 (+) Length   176 a.a.
NCBI ID   WP_185815777.1    Uniprot ID   -
Organism   Xanthomonas sp. SS     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1643956..1657880 1643321..1643851 flank 105


Gene organization within MGE regions


Location: 1643321..1657880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP74_RS06885 (HEP74_01352) ssb 1643321..1643851 (+) 531 WP_185815777.1 single-stranded DNA-binding protein Machinery gene
  HEP74_RS06890 (HEP74_01353) - 1643956..1644231 (+) 276 WP_185815778.1 hypothetical protein -
  HEP74_RS06895 (HEP74_01354) - 1645043..1646140 (-) 1098 WP_185815779.1 cytochrome c peroxidase -
  HEP74_RS06900 (HEP74_01356) - 1646271..1651949 (+) 5679 WP_255427958.1 IPT/TIG domain-containing protein -
  HEP74_RS06905 (HEP74_01357) - 1651977..1657427 (+) 5451 WP_185815781.1 RHS repeat-associated core domain-containing protein -
  HEP74_RS06910 (HEP74_01358) - 1657434..1657880 (+) 447 WP_185815782.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18856.77 Da        Isoelectric Point: 5.3242

>NTDB_id=436756 HEP74_RS06885 WP_185815777.1 1643321..1643851(+) (ssb) [Xanthomonas sp. SS]
MARGINKVILVGNLGNDPDTKYTQAGMAITRISLATTSVRKDKDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGVEKYSTDIVADEMQMLGGREGGGGGGAGMGGDRPQRAAAPRQERPNQGGGGQGGGGQDYAPRRQQPAP
QQSAPMDDFADDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=436756 HEP74_RS06885 WP_185815777.1 1643321..1643851(+) (ssb) [Xanthomonas sp. SS]
ATGGCCCGCGGCATCAATAAAGTCATCCTCGTCGGCAACCTCGGCAACGACCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCATCAGCCTGGCCACCACCAGCGTGCGCAAGGACAAGGACGGCAACCAGCAGGAGCGCACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACTCCACCGACATCGTCGCCGACGAGATGCAGAT
GCTGGGCGGTCGCGAAGGCGGCGGCGGTGGTGGTGCCGGCATGGGCGGCGATCGCCCGCAGCGTGCGGCCGCACCGCGCC
AGGAACGCCCGAACCAGGGCGGCGGCGGGCAGGGCGGCGGTGGCCAGGACTACGCGCCGCGCCGCCAGCAGCCGGCGCCG
CAGCAGTCCGCGCCGATGGACGATTTCGCGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.739

100

0.489
  ssb Vibrio cholerae strain A1552

44.503

100

0.483
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.472
  ssb Neisseria meningitidis MC58

45.506

100

0.46