Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HEP73_RS07250 Genome accession   NZ_CP051189
Coordinates   1723608..1724138 (+) Length   176 a.a.
NCBI ID   WP_185822667.1    Uniprot ID   A0A7G7SUV6
Organism   Xanthomonas sp. GW     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1718608..1729138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP73_RS07235 (HEP73_01423) murD 1719768..1721192 (+) 1425 WP_185822666.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  HEP73_RS07240 (HEP73_01424) - 1721425..1722219 (+) 795 WP_185815775.1 dienelactone hydrolase family protein -
  HEP73_RS07245 (HEP73_01425) - 1722417..1723415 (-) 999 WP_185815776.1 polyprenyl synthetase family protein -
  HEP73_RS07250 (HEP73_01426) ssb 1723608..1724138 (+) 531 WP_185822667.1 single-stranded DNA-binding protein Machinery gene
  HEP73_RS07255 (HEP73_01427) - 1724548..1725444 (+) 897 WP_185823338.1 TIM barrel protein -
  HEP73_RS07260 (HEP73_01428) - 1725475..1727160 (+) 1686 WP_185822668.1 GMC family oxidoreductase -
  HEP73_RS07265 (HEP73_01429) - 1727160..1727735 (+) 576 WP_185822669.1 gluconate 2-dehydrogenase subunit 3 family protein -
  HEP73_RS07270 (HEP73_01430) - 1727780..1728523 (+) 744 WP_185823339.1 DUF1080 domain-containing protein -
  HEP73_RS07275 (HEP73_01431) - 1728551..1728847 (-) 297 WP_185822670.1 cytochrome c -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18916.83 Da        Isoelectric Point: 5.3242

>NTDB_id=436736 HEP73_RS07250 WP_185822667.1 1723608..1724138(+) (ssb) [Xanthomonas sp. GW]
MARGINKVILVGNLGNDPDTKYTQAGMAITRISLATTSVRKDKDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGVEKYSTDIVADEMQMLGGREGGGSGGAGMGGDRPQRAAAPRQERPNQGGSGQGGGGQDYAPRRQQPAP
QQSAPMDDFADDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=436736 HEP73_RS07250 WP_185822667.1 1723608..1724138(+) (ssb) [Xanthomonas sp. GW]
ATGGCCCGCGGCATCAATAAAGTCATCCTCGTCGGCAACCTCGGCAACGACCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCATCAGCCTGGCCACCACCAGCGTGCGCAAGGACAAGGACGGCAACCAGCAGGAGCGCACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTATTCCACCGACATCGTCGCCGACGAGATGCAGAT
GCTGGGCGGTCGCGAAGGCGGCGGCAGTGGTGGTGCCGGCATGGGCGGCGATCGCCCGCAGCGTGCGGCCGCACCGCGCC
AGGAACGCCCGAACCAGGGCGGCAGCGGGCAGGGCGGCGGTGGCCAGGATTATGCGCCGCGCCGGCAACAGCCGGCGCCG
CAGCAGTCCGCGCCGATGGACGATTTCGCGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7SUV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.703

100

0.483
  ssb Vibrio cholerae strain A1552

45.055

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.466
  ssb Neisseria meningitidis MC58

45.198

100

0.455