Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   HEP73_RS04970 Genome accession   NZ_CP051189
Coordinates   1174681..1175739 (+) Length   352 a.a.
NCBI ID   WP_343203498.1    Uniprot ID   -
Organism   Xanthomonas sp. GW     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1169681..1180739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP73_RS04955 (HEP73_00972) - 1170293..1171111 (-) 819 WP_185822342.1 hypothetical protein -
  HEP73_RS04960 (HEP73_00973) - 1171176..1171823 (-) 648 WP_179566916.1 hypothetical protein -
  HEP73_RS04965 (HEP73_00974) - 1172034..1174463 (-) 2430 WP_185822343.1 penicillin-binding protein 1A -
  HEP73_RS04970 (HEP73_00975) pilM 1174681..1175739 (+) 1059 WP_343203498.1 pilus assembly protein PilM Machinery gene
  HEP73_RS04975 (HEP73_00976) - 1175739..1176509 (+) 771 WP_185822344.1 PilN domain-containing protein -
  HEP73_RS04980 (HEP73_00977) - 1176506..1177180 (+) 675 WP_185815399.1 type 4a pilus biogenesis protein PilO -
  HEP73_RS04985 (HEP73_00978) - 1177177..1177716 (+) 540 WP_185822345.1 pilus assembly protein PilP -
  HEP73_RS04990 (HEP73_00979) - 1177737..1179629 (+) 1893 WP_185822346.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37724.38 Da        Isoelectric Point: 4.4501

>NTDB_id=436727 HEP73_RS04970 WP_343203498.1 1174681..1175739(+) (pilM) [Xanthomonas sp. GW]
MGLIPKSQQPLIGIDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRSGTRAKHAAAA
VAGSAVITKLIPMPAELDENELEAQVELEAVNYIPYPIDEVNLDFEVLGIIPNNPEMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRQGGLPESYEIEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVATVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=436727 HEP73_RS04970 WP_343203498.1 1174681..1175739(+) (pilM) [Xanthomonas sp. GW]
GTGGGGCTTATTCCAAAGAGTCAGCAACCGCTGATCGGTATCGACATCAGTTCGACCGCGGTCAAGCTGTTGCAGCTGTC
CCGTAGCGGCAACCGGTTCCGCGTAGAGCACTACGCCGTGGAACCCTTGCCGCCCAACGCCGTGGTCGAGAAGAACATCG
TCGAGGTCGAGGCCGTGGGCGAGGCGATCCGCCGCGCCGTGACCCGTTCCGGCACCCGCGCCAAGCATGCCGCCGCGGCG
GTGGCCGGCTCGGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGAGCTCGACGAGAACGAGCTGGAAGCGCAGGTCGA
GCTGGAGGCGGTCAACTACATCCCGTACCCGATCGACGAAGTGAACCTGGATTTCGAGGTGCTGGGGATCATCCCCAACA
ATCCGGAAATGGTGCAGGTGCTGCTGGCCGCATCGCGCTCGGAGAACGTCGAGCTGCGCCAGTCGGCGCTGGAGCTCGGC
GGCCTGGTCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAGAACGCGTTCGCGTTGGTCGCCAGCGAGCTGCCGGT
GGCGGCCGACGGCGTCGTCGCCCTGGTCGACATCGGCGCCACCATGACCACGCTCAACGTGCTGCGCGGCGGACGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTACGGCCTGACCTACGAGGAA
GCCGGCATGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGCCTGCTGCAGTTTTTCTACGCCGGTAGCGAATTCAATCGGGTCGACCATATCGTGCTGGCCGGCG
GTTGCGCGGCGCTGGCCGGGCTGCCGGAGATGGTCGAGGAACAATTGGGAGTGGCGACCGTGGTCGCCAACCCGCTGGCG
CAGATGACCCTGGGGCCGAAGGTCCAGGCGCATGCGCTGGCCCAGGACGCACCGGCGCTGATGATCGCCACCGGCCTGGC
TCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.42

100

0.514
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

49.716

100

0.497
  pilM Legionella pneumophila strain ERS1305867

47.429

99.432

0.472