Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HFV01_RS22575 Genome accession   NZ_CP051185
Coordinates   4780857..4781222 (+) Length   121 a.a.
NCBI ID   WP_006617199.1    Uniprot ID   A0A9P1KBB6
Organism   Limnospira fusiformis SAG 85.79     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4775857..4786222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFV01_RS22570 (HFV01_23155) - 4779372..4780622 (+) 1251 WP_006621459.1 response regulator -
  HFV01_RS22575 (HFV01_23160) pilH 4780857..4781222 (+) 366 WP_006617199.1 response regulator transcription factor Machinery gene
  HFV01_RS22580 (HFV01_23165) - 4781233..4781769 (+) 537 WP_006621462.1 chemotaxis protein CheW -
  HFV01_RS22585 (HFV01_23170) - 4781989..4785363 (+) 3375 WP_006669108.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13533.75 Da        Isoelectric Point: 5.2067

>NTDB_id=436722 HFV01_RS22575 WP_006617199.1 4780857..4781222(+) (pilH) [Limnospira fusiformis SAG 85.79]
MNTIMVVEDSVTQREMISNLLRESGLKVAVASDGVEALEQVQQISPDLVVLDIVMPRMNGYELCRRLKSDPKTQKIAIVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=436722 HFV01_RS22575 WP_006617199.1 4780857..4781222(+) (pilH) [Limnospira fusiformis SAG 85.79]
ATGAATACAATTATGGTTGTAGAAGACAGTGTGACACAACGGGAGATGATCTCAAATCTCCTGAGAGAAAGTGGCTTAAA
AGTCGCGGTAGCAAGCGACGGTGTAGAGGCACTAGAACAAGTTCAACAAATCTCTCCCGATCTAGTGGTGTTGGATATTG
TAATGCCTCGCATGAATGGCTACGAACTGTGTCGCCGTCTCAAGTCTGATCCGAAAACTCAAAAAATTGCCATTGTGATG
TGTTCTTCCAAGGGAGAGGAGTTCGATCGATATTGGGGCATGAAACAGGGGGCAGATGCTTATATCGCCAAACCATTTCA
GCCGACTGAACTGGTAGGGACGGTTAAACAGCTATTAAGGGGGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

72.727

100

0.727
  chpA Acinetobacter baumannii strain A118

42.241

95.868

0.405
  pilG Acinetobacter baumannii strain A118

39.474

94.215

0.372
  micA Streptococcus pneumoniae Cp1015

37.5

99.174

0.372