NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	HF906_RS03560	Genome accession	NZ_CP051175
Coordinates	773816..774697 (-)	Length	293 a.a.
NCBI ID	WP_043892401.1	Uniprot ID	A0AAP7ZP00
Organism	Ralstonia solanacearum strain Rs5
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 768816..779697

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF906_RS03530 (HF906_03535)	argJ	769521..770750 (+)	1230	WP_003271610.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
HF906_RS03535 (HF906_03540)	-	770766..771650 (+)	885	WP_119447185.1	ATP-binding protein	-
HF906_RS03540 (HF906_03545)	-	771628..772089 (+)	462	WP_043892400.1	NUDIX domain-containing protein	-
HF906_RS03545 (HF906_03550)	yacG	772082..772297 (-)	216	WP_003271616.1	DNA gyrase inhibitor YacG	-
HF906_RS03550 (HF906_03555)	zapD	772313..773071 (-)	759	WP_003271617.1	cell division protein ZapD	-
HF906_RS03555 (HF906_03560)	coaE	773189..773803 (-)	615	WP_003271619.1	dephospho-CoA kinase	-
HF906_RS03560 (HF906_03565)	pilD	773816..774697 (-)	882	WP_043892401.1	prepilin peptidase	Machinery gene
HF906_RS03565 (HF906_03570)	pilG	774700..775965 (-)	1266	WP_003271622.1	type II secretion system F family protein	Machinery gene
HF906_RS03570 (HF906_03575)	pilF	776010..777737 (-)	1728	WP_003271624.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HF906_RS03575 (HF906_03580)	-	777985..779262 (-)	1278	WP_003271625.1	HlyC/CorC family transporter	-

Sequence

Protein

Download Length: 293 a.a. Molecular weight: 31636.67 Da Isoelectric Point: 7.6173

                                >NTDB_id=436593 HF906_RS03560 WP_043892401.1 773816..774697(-) (pilD) [Ralstonia solanacearum strain Rs5]

MSGMFAIPTLALLPAWFVIGAAALLGLLVGSFLNVVIHRLPRMIEREEANYIAELRNEPLPHPEPYNLVVPRSACPSCGH

QIKAIENIPVISWLALRGRCSACKTPISWRYPAVELVTCVLTGACLWHFGPTWVAVASAALLWFLIAATMIDADTQLLPD

AITQPLLWLGLLVNLFDMFARLPDAVIGAMAGYLFLWAIYWAYKLLRGREGMGYGDFKLMAALGAWFGWQALPLLILLSS

VVGLVFGAARIARGAESDSPFSFGPFIAGAGVIALLAGPQLVALTGLAPLLAR

Nucleotide

Download Length: 882 bp

                                >NTDB_id=436593 HF906_RS03560 WP_043892401.1 773816..774697(-) (pilD) [Ralstonia solanacearum strain Rs5]

ATGTCCGGGATGTTCGCCATTCCCACGCTGGCGCTACTGCCCGCGTGGTTCGTGATCGGCGCGGCGGCGCTGCTGGGGCT

GCTGGTCGGCAGCTTCCTCAACGTGGTGATCCACCGCTTGCCGCGCATGATCGAACGCGAGGAGGCCAACTACATCGCCG

AGCTGCGCAACGAGCCGCTGCCGCATCCCGAGCCGTACAACCTGGTCGTGCCGCGCTCGGCCTGCCCGTCGTGCGGCCAC

CAGATCAAAGCGATCGAGAACATCCCGGTGATCAGTTGGCTGGCATTGCGCGGCCGCTGCAGCGCCTGCAAGACGCCCAT

CTCCTGGCGCTACCCCGCCGTGGAACTGGTGACCTGCGTACTGACCGGCGCCTGCCTGTGGCATTTCGGACCGACCTGGG

TGGCGGTGGCCTCGGCCGCGCTGCTGTGGTTCCTGATCGCCGCCACGATGATCGACGCCGACACGCAGTTGCTGCCCGAT

GCCATCACCCAGCCGCTGCTGTGGCTCGGCCTGCTGGTGAACCTGTTCGACATGTTCGCGCGGCTGCCGGACGCAGTGAT

CGGCGCGATGGCCGGATATCTGTTCCTGTGGGCCATCTACTGGGCCTACAAACTGCTGCGGGGCCGGGAGGGCATGGGCT

ACGGCGACTTCAAGCTGATGGCCGCGCTCGGTGCCTGGTTCGGCTGGCAGGCGCTGCCGTTGTTGATCCTGCTGTCGTCG

GTGGTCGGCCTGGTGTTCGGGGCGGCGCGCATCGCGCGTGGCGCCGAAAGCGACTCCCCATTTTCGTTCGGCCCGTTCAT

CGCGGGTGCCGGCGTCATCGCCCTGCTGGCCGGCCCACAGCTGGTGGCATTGACGGGACTCGCACCGCTGCTGGCGCGGT

AA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(24-129)

Type IV leader peptidase family (Peptidase_A24)

(140-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	53.962	90.444	0.488
pilD	Vibrio campbellii strain DS40M4	50.916	93.174	0.474
pilD	Neisseria gonorrhoeae MS11	50	91.468	0.457
pilD	Acinetobacter nosocomialis M2	46.992	90.785	0.427
pilD	Acinetobacter baumannii D1279779	46.992	90.785	0.427

Detailed information NTG0436593