Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LP12_RS01770 Genome accession   NC_016811
Coordinates   400582..401061 (-) Length   159 a.a.
NCBI ID   WP_015444870.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila ATCC 43290     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 395582..406061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP12_RS01735 (lp12_0349) rplO 395713..396147 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  LP12_RS01740 (lp12_0350) secY 396150..397478 (+) 1329 WP_014840959.1 preprotein translocase subunit SecY -
  LP12_RS15090 (lp12_0351) rpmJ 397495..397608 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  LP12_RS01745 (lp12_0352) rpsM 397686..398042 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  LP12_RS01750 (lp12_0353) rpsK 398066..398464 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  LP12_RS01755 (lp12_0354) rpsD 398481..399101 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  LP12_RS01760 (lp12_0355) - 399120..400112 (+) 993 WP_010946103.1 DNA-directed RNA polymerase subunit alpha -
  LP12_RS01765 (lp12_0356) rplQ 400131..400514 (+) 384 WP_010946104.1 50S ribosomal protein L17 -
  LP12_RS01770 (lp12_0357) ssb 400582..401061 (-) 480 WP_015444870.1 single-stranded DNA-binding protein Machinery gene
  LP12_RS01775 (lp12_0358) - 401145..402512 (-) 1368 WP_010946106.1 MFS transporter -
  LP12_RS01780 (lp12_0359) fabL 402674..403432 (+) 759 WP_010946107.1 enoyl-[acyl-carrier-protein] reductase FabL -
  LP12_RS01785 (lp12_0360) - 403503..403916 (+) 414 WP_010946108.1 acyl carrier protein -
  LP12_RS01790 (lp12_0361) - 403916..404812 (+) 897 WP_015444869.1 hypothetical protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17643.40 Da        Isoelectric Point: 4.6616

>NTDB_id=43648 LP12_RS01770 WP_015444870.1 400582..401061(-) (ssb) [Legionella pneumophila subsp. pneumophila ATCC 43290]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=43648 LP12_RS01770 WP_015444870.1 400582..401061(-) (ssb) [Legionella pneumophila subsp. pneumophila ATCC 43290]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTAGTCTGTTTTAATCGTCTGGGTGAAATAGCCGGAGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATTCA
AATGCTCGATAGCAAAGGAAGTAGTGCCACTAATTACGACGACATGCCTTCATTTCAGGGAACCTCTACCCCTCAACAAG
CTTCAACAAAAAATCAAGCAACTCCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.143

100

0.541
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434

Multiple sequence alignment