Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   LPO_RS07485 Genome accession   NC_018139
Coordinates   1634911..1635921 (-) Length   336 a.a.
NCBI ID   WP_025862355.1    Uniprot ID   Q5ZV64
Organism   Legionella pneumophila subsp. pneumophila     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1629911..1640921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPO_RS07455 (LPO_1589) - 1630250..1631083 (-) 834 WP_014841694.1 S1/P1 nuclease -
  LPO_RS07460 (LPO_1590) tolB 1631086..1632345 (-) 1260 WP_014841695.1 Tol-Pal system beta propeller repeat protein TolB -
  LPO_RS07465 (LPO_1591) tolA 1632351..1633349 (-) 999 WP_014841696.1 cell envelope integrity protein TolA -
  LPO_RS07470 (LPO_1592) tolR 1633346..1633801 (-) 456 WP_010947302.1 protein TolR -
  LPO_RS07475 (LPO_1593) tolQ 1633810..1634487 (-) 678 WP_011946571.1 protein TolQ -
  LPO_RS07480 (LPO_1594) ybgC 1634512..1634907 (-) 396 WP_014841697.1 tol-pal system-associated acyl-CoA thioesterase -
  LPO_RS07485 (LPO_1595) ruvB 1634911..1635921 (-) 1011 WP_025862355.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LPO_RS07490 (LPO_1596) - 1636068..1636631 (-) 564 WP_010947306.1 sigma-70 family RNA polymerase sigma factor -
  LPO_RS07495 (LPO_1597) - 1636732..1637175 (-) 444 WP_032832226.1 lpg1578 family Dot/Icm T4SS effector -
  LPO_RS07500 (LPO_1598) - 1637117..1637356 (-) 240 WP_011215498.1 succinate dehydrogenase assembly factor 2 -
  LPO_RS07505 (LPO_1599) - 1637482..1638471 (+) 990 WP_014841700.1 YgfZ/GcvT domain-containing protein -
  LPO_RS07510 (LPO_1600) - 1638502..1639050 (-) 549 WP_014841701.1 cytochrome b -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37104.63 Da        Isoelectric Point: 5.2639

>NTDB_id=43628 LPO_RS07485 WP_025862355.1 1634911..1635921(-) (ruvB) [Legionella pneumophila subsp. pneumophila]
MLESDRLISSQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKTTLANIIAHEMG
VNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGA
TTRAGLLTSPLRDRFGIVQRLEYYSVDSLTQIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNG
IITVDMAQQALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFLMRTPRGRIA
TSKAYQHFGFSAIEQE

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=43628 LPO_RS07485 WP_025862355.1 1634911..1635921(-) (ruvB) [Legionella pneumophila subsp. pneumophila]
ATGCTCGAAAGTGATCGCCTAATAAGTAGTCAAAGTATTGTCTCGGAAGACGCAATGGATAGAGCCATCAGGCCGCTTAG
CTTGAGCGAGTACGTAGGGCAAGATTCTGTTAGCTCACAGATGCAGATATTTATCAATGCGGCAAGAAAGAGAAACGATC
CTTTGGATCATGTTCTTATCTTTGGCCCACCTGGCCTTGGTAAAACTACCCTTGCAAATATCATAGCTCACGAAATGGGA
GTGAATATCCGACAAACTTCTGGGCCAGTGATTGAGCGTGCTGGAGATATTGCTGCTATATTGACGAATCTACAACAAAA
TGATGTACTATTTATTGACGAAATTCATAGATTAAGTCCTGTTATAGAAGAAATTCTTTATCCAGCCATGGAAGATTATA
AGTTGGATATCATGATAGGAGAGGGGCCAGCAGCACGATCCATTAAATTGGAGTTACCTCCCTTTACATTAATTGGAGCA
ACGACAAGAGCAGGGTTGCTTACCTCGCCATTAAGGGATAGATTTGGTATAGTGCAACGTTTGGAATATTATTCTGTTGA
TTCGCTTACCCAGATTGTGGCACGCTCTGCGCATTTGCTTGGTGTCCCTACAAAACCCGAAGGAGCCAGAGAAATTGCAT
TACGCTCCAGAGGAACACCACGAATAGCCAATCGCCTGTTAAGAAGAGTCAGAGATTATTCTGAAGTGAAAGGAAATGGC
ATCATTACTGTTGATATGGCTCAACAAGCATTGGAAATGCTTGAAGTGGATCAGCACGGGTTTGATTTAATGGATAGAAA
ATTATTGTTAGCGGTGATAGAACACTTCAATGGTGGTCCAGTAGGCATAGATAGTATTGCAGCTGCTATTGGCGAAGAAA
AAGGGACTATAGAAGATGTTTTGGAGCCATTTTTAATACAACAAGGCTTTCTAATGCGCACTCCTCGCGGTAGAATAGCC
ACTTCGAAAGCTTATCAGCATTTTGGTTTTAGTGCGATCGAACAGGAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZV64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.366

97.619

0.589
  ruvB Streptococcus pneumoniae TIGR4

56.667

98.214

0.557
  ruvB Streptococcus pneumoniae R6

56.667

98.214

0.557
  ruvB Streptococcus pneumoniae D39

56.667

98.214

0.557
  ruvB Helicobacter pylori 26695

52.795

95.833

0.506
  ruvB Synechocystis sp. PCC 6803

53.871

92.262

0.497

Multiple sequence alignment