Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IL980_RS20805 Genome accession   NZ_CP063046
Coordinates   4328780..4330207 (-) Length   475 a.a.
NCBI ID   WP_000980614.1    Uniprot ID   -
Organism   Escherichia coli strain KC-Dl-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4323780..4335207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL980_RS20775 (IL980_20775) yeeZ 4323835..4324659 (+) 825 WP_000754740.1 SDR family oxidoreductase -
  IL980_RS20780 (IL980_20780) yeeY 4324705..4325634 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  IL980_RS20785 (IL980_20785) yoeI 4325849..4325911 (+) 63 WP_010723108.1 membrane protein YoeI -
  IL980_RS20790 (IL980_20790) plaP 4325901..4327259 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IL980_RS20795 (IL980_20795) tsuA 4327438..4328496 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  IL980_RS20800 (IL980_20800) tsuB 4328510..4328737 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IL980_RS20805 (IL980_20805) sbcB 4328780..4330207 (-) 1428 WP_000980614.1 exodeoxyribonuclease I Machinery gene
  IL980_RS20810 (IL980_20810) dacD 4330416..4331582 (+) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IL980_RS20815 (IL980_20815) sbmC 4331701..4332174 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  IL980_RS20820 (IL980_20820) yeeA 4332372..4333430 (+) 1059 WP_001200894.1 FUSC family protein -
  IL980_RS20825 (IL980_20825) tmaR 4333602..4333931 (+) 330 WP_000450409.1 DUF496 family protein -
  IL980_RS26250 (IL980_20830) - 4334032..4334214 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  IL980_RS26035 - 4334334..4334414 (+) 81 WP_023441679.1 hypothetical protein -
  IL980_RS20840 (IL980_20840) - 4334703..4334783 (-) 81 Protein_4105 hypothetical protein -
  IL980_RS20845 (IL980_20845) yeeW 4334829..4335023 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.74 Da        Isoelectric Point: 5.6054

>NTDB_id=436182 IL980_RS20805 WP_000980614.1 4328780..4330207(-) (sbcB) [Escherichia coli strain KC-Dl-1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTARADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=436182 IL980_RS20805 WP_000980614.1 4328780..4330207(-) (sbcB) [Escherichia coli strain KC-Dl-1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAGAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581