Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HFP57_RS11505 Genome accession   NZ_CP051131
Coordinates   2333837..2334334 (-) Length   165 a.a.
NCBI ID   WP_176869897.1    Uniprot ID   -
Organism   Parasphingopyxis algicola strain JCM 31719     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2328837..2339334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFP57_RS11485 (HFP57_11490) - 2329825..2332086 (+) 2262 WP_176869894.1 NADP-dependent malic enzyme -
  HFP57_RS11490 (HFP57_11495) bamE 2332135..2332617 (-) 483 WP_246263674.1 outer membrane protein assembly factor BamE -
  HFP57_RS11495 (HFP57_11500) - 2332757..2333284 (+) 528 WP_176869895.1 ubiquinol-cytochrome C chaperone family protein -
  HFP57_RS11500 (HFP57_11505) - 2333281..2333820 (+) 540 WP_176869896.1 DUF177 domain-containing protein -
  HFP57_RS11505 (HFP57_11510) ssb 2333837..2334334 (-) 498 WP_176869897.1 single-stranded DNA-binding protein Machinery gene
  HFP57_RS11510 (HFP57_11515) - 2334461..2336329 (-) 1869 WP_176869898.1 ferrous iron transporter B -
  HFP57_RS11515 (HFP57_11520) - 2336326..2336577 (-) 252 WP_176869899.1 FeoA family protein -
  HFP57_RS11520 (HFP57_11525) - 2336653..2337318 (-) 666 WP_176869900.1 COQ9 family protein -
  HFP57_RS11525 (HFP57_11530) - 2337453..2338034 (+) 582 WP_176869901.1 urate hydroxylase PuuD -
  HFP57_RS11530 (HFP57_11535) - 2338189..2339283 (+) 1095 WP_176869902.1 alkene reductase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17632.09 Da        Isoelectric Point: 4.7066

>NTDB_id=436111 HFP57_RS11505 WP_176869897.1 2333837..2334334(-) (ssb) [Parasphingopyxis algicola strain JCM 31719]
MAGSVNKVILIGNLGRDPETRTFSNGGKVCNLRIATSESWKDKQTGERRERTEWHSVAIFSEGLANVAERYLRKGSKVYI
EGQLRTRKWQDQSGNDRYSTEVVIDGFNGSMTMLDGRDGGGGSGGSGGWNDGPSDNDGGYGGGQSSGSKPAGGAFDDDLD
DDVPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=436111 HFP57_RS11505 WP_176869897.1 2333837..2334334(-) (ssb) [Parasphingopyxis algicola strain JCM 31719]
ATGGCGGGCAGCGTCAACAAGGTAATCCTGATCGGCAATCTGGGGCGCGACCCGGAGACGCGGACGTTCAGCAACGGCGG
CAAGGTCTGCAATCTGAGGATCGCGACGTCGGAGAGCTGGAAGGACAAGCAGACCGGCGAGCGCCGGGAGCGTACGGAAT
GGCACAGCGTTGCGATCTTTTCGGAAGGACTCGCCAATGTCGCCGAACGCTATCTGCGCAAGGGCAGCAAGGTCTATATC
GAAGGCCAGCTGCGCACCCGCAAATGGCAGGACCAGTCCGGCAACGACCGCTATTCGACCGAGGTCGTGATCGACGGTTT
CAACGGCAGTATGACCATGCTCGACGGCCGCGATGGTGGCGGGGGCAGCGGCGGTTCCGGCGGCTGGAATGACGGGCCTT
CGGACAATGACGGGGGATATGGCGGCGGCCAGTCTTCAGGTTCGAAACCAGCCGGCGGCGCGTTCGACGACGATCTCGAC
GACGACGTCCCCTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.613

100

0.582
  ssb Vibrio cholerae strain A1552

53.714

100

0.57
  ssb Neisseria gonorrhoeae MS11

38.095

100

0.436
  ssb Neisseria meningitidis MC58

37.566

100

0.43