Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HFP51_RS10910 Genome accession   NZ_CP051130
Coordinates   2248997..2249497 (-) Length   166 a.a.
NCBI ID   WP_176875748.1    Uniprot ID   -
Organism   Parasphingopyxis sp. CP4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2243997..2254497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFP51_RS10890 (HFP51_10895) - 2245017..2247278 (+) 2262 WP_176875744.1 NADP-dependent malic enzyme -
  HFP51_RS10895 (HFP51_10900) - 2247311..2247814 (-) 504 WP_176875745.1 outer membrane protein assembly factor BamE -
  HFP51_RS10900 (HFP51_10905) - 2247933..2248460 (+) 528 WP_176875746.1 ubiquinol-cytochrome C chaperone family protein -
  HFP51_RS10905 (HFP51_10910) - 2248457..2248993 (+) 537 WP_176875747.1 DUF177 domain-containing protein -
  HFP51_RS10910 (HFP51_10915) ssb 2248997..2249497 (-) 501 WP_176875748.1 single-stranded DNA-binding protein Machinery gene
  HFP51_RS10915 (HFP51_10920) - 2249657..2249899 (-) 243 WP_176875749.1 FeoA family protein -
  HFP51_RS10920 (HFP51_10925) - 2249904..2250569 (-) 666 WP_176875750.1 COQ9 family protein -
  HFP51_RS10925 (HFP51_10930) - 2250703..2251287 (+) 585 WP_176875751.1 urate hydroxylase PuuD -
  HFP51_RS10930 (HFP51_10935) - 2251431..2252525 (+) 1095 WP_176875752.1 alkene reductase -
  HFP51_RS10935 (HFP51_10940) mddA 2252597..2253367 (+) 771 WP_176875753.1 methanethiol S-methyltransferase -
  HFP51_RS10940 (HFP51_10945) - 2253372..2253749 (-) 378 WP_176875754.1 hypothetical protein -
  HFP51_RS10945 (HFP51_10950) ribH 2253746..2254171 (-) 426 WP_176875755.1 6,7-dimethyl-8-ribityllumazine synthase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17481.92 Da        Isoelectric Point: 4.8336

>NTDB_id=436103 HFP51_RS10910 WP_176875748.1 2248997..2249497(-) (ssb) [Parasphingopyxis sp. CP4]
MAGSVNKVILIGNLGRDPESRTFNNGGKVCNLRIATSENWKDKQTGERRERTEWHSVAIFSEGLANVAERYLRKGSKVYI
EGQLRTRKWQDQSGNDRYSTEVVIDGFNGSMTMLDGRDGGGGGGGGSAGGGGDSWGDSGGNGGGQSSGSKPAGGAFDDDL
DDDVPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=436103 HFP51_RS10910 WP_176875748.1 2248997..2249497(-) (ssb) [Parasphingopyxis sp. CP4]
ATGGCAGGCAGCGTCAACAAGGTAATATTGATCGGTAATCTCGGACGCGATCCTGAAAGCCGCACCTTCAACAATGGTGG
CAAGGTCTGCAATTTGCGGATTGCCACATCTGAAAACTGGAAAGACAAGCAGACCGGGGAACGCCGCGAGCGTACCGAAT
GGCACAGCGTTGCCATTTTCTCCGAAGGTCTCGCCAATGTTGCTGAACGCTATCTGCGTAAAGGCAGCAAGGTCTATATC
GAAGGCCAGCTTCGGACGCGGAAATGGCAGGACCAGTCCGGCAATGACCGCTATTCCACCGAAGTCGTGATCGATGGTTT
TAACGGCAGCATGACGATGCTCGACGGCCGCGATGGTGGCGGTGGCGGTGGCGGCGGCAGTGCTGGCGGTGGTGGTGATA
GTTGGGGCGACTCAGGGGGCAATGGCGGGGGCCAATCCTCCGGTTCCAAGCCTGCCGGTGGCGCGTTCGACGACGATCTC
GACGACGACGTACCCTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.913

100

0.572
  ssb Glaesserella parasuis strain SC1401

48.925

100

0.548
  ssb Neisseria gonorrhoeae MS11

38.674

100

0.422
  ssb Neisseria meningitidis MC58

39.106

100

0.422