Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HCM98_RS29010 Genome accession   NZ_CP051013
Coordinates   5534995..5535516 (-) Length   173 a.a.
NCBI ID   WP_000981967.1    Uniprot ID   A0A063CSK8
Organism   Bacillus tropicus strain LM1212-DB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5529995..5540516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCM98_RS28990 (HCM98_29020) rplI 5531205..5531651 (-) 447 WP_029440301.1 50S ribosomal protein L9 -
  HCM98_RS28995 (HCM98_29025) - 5531648..5533621 (-) 1974 WP_001113900.1 DHH family phosphoesterase -
  HCM98_RS29000 (HCM98_29030) - 5533700..5534635 (-) 936 WP_029440300.1 YybS family protein -
  HCM98_RS29005 (HCM98_29035) rpsR 5534716..5534949 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  HCM98_RS29010 (HCM98_29040) ssbA 5534995..5535516 (-) 522 WP_000981967.1 single-stranded DNA-binding protein Machinery gene
  HCM98_RS29015 (HCM98_29045) rpsF 5535543..5535833 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  HCM98_RS29020 (HCM98_29050) ychF 5536025..5537125 (-) 1101 WP_029440299.1 redox-regulated ATPase YchF -
  HCM98_RS29025 (HCM98_29055) - 5537241..5537438 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  HCM98_RS29030 (HCM98_29060) - 5537459..5538340 (-) 882 WP_029440298.1 mechanosensitive ion channel family protein -
  HCM98_RS29035 (HCM98_29065) yyaC 5538600..5539196 (+) 597 WP_001020718.1 spore protease YyaC -
  HCM98_RS29040 (HCM98_29070) spo0J 5539217..5540068 (-) 852 WP_001991691.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18823.61 Da        Isoelectric Point: 4.9327

>NTDB_id=436094 HCM98_RS29010 WP_000981967.1 5534995..5535516(-) (ssbA) [Bacillus tropicus strain LM1212-DB]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=436094 HCM98_RS29010 WP_000981967.1 5534995..5535516(-) (ssbA) [Bacillus tropicus strain LM1212-DB]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGGCGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACCAAGGTAACCAAGGAAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063CSK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.316

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.272

0.399
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382