NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	IL989_RS12635	Genome accession	NZ_CP062984
Coordinates	2576671..2577366 (-)	Length	231 a.a.
NCBI ID	WP_013353063.1	Uniprot ID	A0A9P1JJ48
Organism	Bacillus amyloliquefaciens strain PP19 isolate PP19
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2571671..2582366

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IL989_RS12605 (IL989_12605)	-	2571685..2572488 (-)	804	WP_125123038.1	M23 family metallopeptidase	-
IL989_RS12610 (IL989_12610)	minD	2572617..2573420 (-)	804	WP_003152655.1	septum site-determining protein MinD	-
IL989_RS12615 (IL989_12615)	minC	2573423..2574103 (-)	681	WP_013353059.1	septum site-determining protein MinC	-
IL989_RS12620 (IL989_12620)	mreD	2574157..2574675 (-)	519	WP_193350500.1	rod shape-determining protein MreD	-
IL989_RS12625 (IL989_12625)	mreC	2574672..2575535 (-)	864	WP_013353061.1	rod shape-determining protein MreC	-
IL989_RS12630 (IL989_12630)	mreB	2575566..2576579 (-)	1014	WP_013353062.1	cell shape-determining protein MreB	-
IL989_RS12635 (IL989_12635)	ysxA/radC	2576671..2577366 (-)	696	WP_013353063.1	DNA repair protein RadC	Machinery gene
IL989_RS12640 (IL989_12640)	-	2577398..2577967 (-)	570	WP_013353064.1	nucleoside triphosphate pyrophosphatase	-
IL989_RS12645 (IL989_12645)	-	2578109..2579110 (-)	1002	WP_193350501.1	SPOR domain-containing protein	-
IL989_RS12650 (IL989_12650)	comC	2579237..2579989 (-)	753	WP_013353066.1	A24 family peptidase	Machinery gene
IL989_RS12655 (IL989_12655)	-	2580128..2581420 (-)	1293	WP_193350502.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-

Sequence

Protein

Download Length: 231 a.a. Molecular weight: 26066.29 Da Isoelectric Point: 8.9381

                                >NTDB_id=435972 IL989_RS12635 WP_013353063.1 2576671..2577366(-) (ysxA/radC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]

MIIRDLPLKLRDFPEKEKPRERLLHCGAEHLSNNELLAILLRTGTKHESVMNLSHRLLRTFDGLRLLKGASAQELSSIPG

IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTIFIGSLNSSIVH

PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide

Download Length: 696 bp

                                >NTDB_id=435972 IL989_RS12635 WP_013353063.1 2576671..2577366(-) (ysxA/radC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]

TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCATTGCGG

GGCCGAACATCTTTCTAACAATGAATTGCTCGCCATCCTGCTGAGGACGGGAACGAAACATGAGTCCGTCATGAATCTCT

CTCACCGGCTGCTGAGGACGTTTGACGGGCTGCGCCTGTTAAAAGGCGCTTCTGCCCAGGAGCTTTCCAGCATCCCCGGG

ATCGGCACGGTGAAAGCCGTTCAGATCCTTGCTGCAATTGAGCTGGGGAGCCGTATTCATAAGACATCCGCCGGAGAGCA

TTGCGTCATCCGTTCTCCCGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT

GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCATTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC

CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCACAATCATCCTTCAGGAGATCC

CACACCGAGCAGGGAAGATATAGAAGTAACTAGACGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC

ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A9P1JJ48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	87.879	100	0.879
radC	Streptococcus pneumoniae TIGR4	49.524	90.909	0.45
radC	Streptococcus pneumoniae R6	49.048	90.909	0.446
radC	Streptococcus pneumoniae D39	49.048	90.909	0.446
radC	Streptococcus gordonii str. Challis substr. CH1	47.143	90.909	0.429

Detailed information NTG0435972