Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HIB_RS02200 Genome accession   NC_016809
Coordinates   426716..427408 (-) Length   230 a.a.
NCBI ID   WP_041175037.1    Uniprot ID   -
Organism   Haemophilus influenzae 10810     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 421716..432408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIB_RS02165 (HIB_04080) - 423298..423504 (-) 207 WP_015701556.1 heavy-metal-associated domain-containing protein -
  HIB_RS02170 (HIB_04090) - 423578..423784 (-) 207 WP_005666693.1 heavy-metal-associated domain-containing protein -
  HIB_RS02175 (HIB_04100) - 423858..424064 (-) 207 WP_005666693.1 heavy-metal-associated domain-containing protein -
  HIB_RS02180 (HIB_04110) - 424150..424356 (-) 207 WP_005686717.1 heavy-metal-associated domain-containing protein -
  HIB_RS02185 (HIB_04120) cueR 424433..424819 (+) 387 WP_005648963.1 Cu(I)-responsive transcriptional regulator -
  HIB_RS02190 (HIB_04130) metJ 424833..425150 (-) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  HIB_RS02195 (HIB_04140) rho 425398..426660 (+) 1263 WP_015701557.1 transcription termination factor Rho -
  HIB_RS02200 (HIB_04150) pilD 426716..427408 (-) 693 WP_041175037.1 prepilin peptidase Machinery gene
  HIB_RS02205 (HIB_04160) pilC 427405..428622 (-) 1218 WP_015701559.1 type II secretion system F family protein Machinery gene
  HIB_RS02210 (HIB_04170) pilB 428619..430013 (-) 1395 WP_015701560.1 GspE/PulE family protein Machinery gene
  HIB_RS02215 (HIB_04180) pilA 430010..430459 (-) 450 WP_015701561.1 prepilin peptidase-dependent pilin Machinery gene
  HIB_RS02220 (HIB_04190) ampD 430573..431127 (+) 555 WP_041175038.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26774.79 Da        Isoelectric Point: 9.0938

>NTDB_id=43592 HIB_RS02200 WP_041175037.1 426716..427408(-) (pilD) [Haemophilus influenzae 10810]
MIYFTMFLLGGILGIALWFYLSGFITRLQQEIYATYIELFPQNRSPFQPHFASIQQKKCGHILRYFLSVGVGFIFLQIAF
KDSIFTVWLGATLLILWAISYLDWHYQLISTTLCLWLLTIGLFGADNNFSLLTLSESIKSAASFFIVFYAIYWIAKFYYG
KEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLGICFSLIHKKKKEFIPFAPFMNLSAVIIYFVKYYWY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=43592 HIB_RS02200 WP_041175037.1 426716..427408(-) (pilD) [Haemophilus influenzae 10810]
ATGATTTACTTCACAATGTTTTTATTAGGCGGCATCTTAGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTACCCG
TTTACAGCAAGAGATTTATGCGACTTATATTGAATTATTTCCACAAAACCGTTCTCCATTTCAACCGCACTTTGCCTCTA
TTCAACAAAAAAAGTGCGGTCATATTTTGAGGTATTTTTTAAGTGTTGGGGTAGGATTTATATTTTTACAAATTGCCTTC
AAAGATTCTATTTTTACTGTATGGCTAGGAGCCACACTTCTTATCCTTTGGGCAATTAGTTATCTTGATTGGCACTATCA
ACTTATTTCTACTACTCTCTGTTTATGGCTACTTACAATCGGTTTATTTGGAGCAGACAATAATTTTTCATTGCTTACGT
TATCTGAAAGCATAAAAAGTGCGGCAAGTTTTTTTATTGTTTTCTACGCAATCTATTGGATTGCAAAATTCTATTACGGA
AAAGAAGCCTTTGGACGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACCTTACCGCACTT
TTTATTATTAGCCTCAGTTCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTATACCTTTTGCCCCTT
TTATGAACTTATCAGCTGTCATAATTTATTTCGTCAAATATTACTGGTATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(93-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

93.043

100

0.93
  pilD Haemophilus influenzae 86-028NP

93.043

100

0.93

Multiple sequence alignment